Job Description P32151 Confidence 6.63% Date Thu Jan 5 11:49:31 GMT 2012 Rank 32 Aligned Residues 77 % Identity 17% Template c2b8kD_ PDB info PDB header:transferase Chain: D: PDB Molecule:dna-directed rna polymerase ii 32 kda PDBTitle: 12-subunit rna polymerase ii Resolution 4.15 Å

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		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.		.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure																		.
Query SS confidence																		.
Query Sequence		V	D	E	Q	A	V	F	D	E	K	M	D	V	Y	I	K	.	C	Y	N	K	L	Q	I	P	V	Q	R	S	L	A	R	Y	A	D	W	L	K	D	F	K	Q	G	P	T	G	E	E	R	T	V	Y	G	I	Y	G	I	S	E	S	N	L	A	E	C	E	K	G	V	K	S	A	V	A	L	T	P	A	L	Q
Query Conservation																		.
Alig confidence																		.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.										.	.	.
Template Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.										.	.	.
Template Sequence		T	G	G	N	N	K	D	L	K	N	T	M	Q	Y	L	T	N	F	S	R	F	R	D	Q	E	T	V	G	A	V	I	Q	L	L	K	S	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	H	P	F	E	.	.	.	.	.	.	.	.	.	.	V	A	Q	L	G	S	L	A	C	.	.	.
Template Known Secondary structure		S		S															S						T	T										T	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T		.	.	.	.	.	.	.	.	.	.							S			.	.	.
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.										.	.	.
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170																.	.	.	.	.	.											.	.	.	180	.	.	.	.	.
		147	.	.	150	.	.	.	.	.	.	.	.	.	160							.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure																.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.
Query Sequence		P	I	D	G	V	A	V	S	Y	I	D	A	A	V	.	.	.	.	.	.	A	L	G	N	T	I	N	E	M	D	K	Y
Query Conservation																.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.
Template Conservation
Template Sequence		D	T	A	D	E	A	K	T	L	I	P	S	L	N	N	K	I	S	D	D	E	L	E	R	I	L	K	E	L	S	N	L
Template Known Secondary structure		S	S								S	T	T		T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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