Job Description P0A853 Confidence 99.94% Date Thu Jan 5 11:06:55 GMT 2012 Rank 85 Aligned Residues 330 % Identity 15% Template d2fnua1 SCOP info PLP-dependent transferase-like PLP-dependent transferases GABA-aminotransferase-like Resolution 1.50

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		59	60	.	.	.	.	.	.	.	.			.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
Predicted Secondary structure												.	.																																														.
Query SS confidence												.	.																																														.
Query Sequence		V	T	Q	S	M	Q	A	A	M	M	.	.	R	G	D	E	A	Y	S	G	S	R	S	Y	Y	A	L	A	E	S	V	K	N	I	F	G	Y	Q	Y	T	I	P	T	H	Q	G	R	G	A	E	Q	I	Y	I	P	V	L	.	I	K	K	R	E	Q	E	K	G	L	D	R	S	K	M	V	A	F	S	N	Y	F
Query Conservation												.	.																																														.
Alig confidence												.	.																																														.									.	.	.	.	.	.	.
Template Conservation																																																																				.	.	.	.	.	.	.
Template Sequence		L	D	K	E	D	K	K	A	V	L	E	V	L	N	S	K	Q	L	T	Q	G	K	R	S	L	L	F	E	E	A	L	C	E	F	L	G	V	K	H	A	L	V	F	N	S	A	T	S	A	L	L	T	L	Y	R	N	F	S	E	F	S	A	D	R	N	E	.	.	.	.	.	.	.	I	I	T	T	P	I	S
Template Known Secondary structure															T	S	S			S	S	S															T		S						S													S	S				T	T	S			.	.	.	.	.	.	.					S	S	S
Template Predicted Secondary structure																																																																				.	.	.	.	.	.	.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.								.	.	.	80	.	.	.
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	D	T	T	Q	G	H	S	Q	I	N	G	C	T	V	R	N	V	Y	I	K	E	A	F	D	T	G	V	R	Y	D	F	K	G	N	F	D	L	E	G	L	E	R	G	I	E	E	V	G	P	N	N	V	P	Y	I	V	A	T	I	T	S	N	S	A	G	G	Q	P	V	S	L	A	N	L	K	A	M	Y	S
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.	.	.																.	.	.	.																.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.																.	.	.	.																.	.	.	.	.	.	.
Template Sequence		F	V	A	T	A	N	M	L	L	E	S	G	Y	T	P	V	F	A	G	I	K	N	.	.	.	.	.	.	.	.	.	.	D	G	N	I	D	E	L	A	L	E	K	L	I	N	E	.	.	.	.	R	T	K	A	I	V	S	V	D	Y	A	G	K	S	V	.	.	.	.	.	.	.	E	V	E	S	V	Q	K
Template Known Secondary structure			T									T	T								B		T	.	.	.	.	.	.	.	.	.	.	T	S	S	B		G	G	G	S	G	G	G			T	.	.	.	.	T									G	G	G				.	.	.	.	.	.	.
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.																.	.	.	.																.	.	.	.	.	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.											.	.	.	.	110	.	.	.	.	.	.	.	.	.	120					.	.	.	.	.	.	.	.	.	130	.	.	.	.	.								.	.	.	.	140	.	.
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	K	K	Y	D	I	P	V	V	M	D	S	A	R	F	A	E	N	A	Y	F	I	K	Q	R	E	A	E	Y	K	D	W	T	I	E	Q	I	T	R	E	T	Y	K	Y	A	D	M	L	A	M	S	A	K	K	D	A	M	V	P	M	G	G	L	L	C	M	K	D	D	S	F	F	D	V	Y	T	E	C	R
Query Conservation
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	C	K	K	H	S	L	S	F	L	S	D	S	S	H	A	L	G	S	E	Y	Q	N	K	K	V	G	G	F	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	S	V	F	S	F	H	A	I	K	P	I	T	T	A	E	G	G	A	V	V	T	N	D	S	E	L	H	E	K	M	K	L	F	R
Template Known Secondary structure							T								T	T		T	T				T	T			T	T	S	S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	T	S	S	S			S	S							S												T
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.															.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
		296	.	.	.	300	.	.	.	.	.						.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.		.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.																							.
Query SS confidence												.	.	.	.	.																							.
Query Sequence		T	L	C	V	V	Q	E	G	F	P	.	.	.	.	.	T	Y	G	G	L	E	G	G	A	M	E	R	L	A	V	G	L	Y	D	G	M	N	.	L	D	W	L	A	Y	R	I	A	Q	V	Q	Y	L	V	D	G	L	E	E	I	G	V	V	C	Q	Q	A	G	G	H	A	A	F	V	D	A	G	K	L	L	P
Query Conservation												.	.	.	.	.																							.
Alig confidence												.	.	.	.	.																							.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	H	G	M	L	K	K	D	F	F	E	G	E	V	K	S	I	G	H	N	F	R	L	N	E	I	Q	S	A	L	G	L	S	Q	L	K	K	A	P	F	L	M	Q	K	R	E	E	A	A	L	T	Y	D	R	I	F	K	D	N	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	F	T	P	L	H
Template Known Secondary structure		B	T	T				S	S	S	S					S	S				B																T	T																				T	T		S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S				S	G
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.															.	270	.	.	.	.
		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.																							.	.	.	.	.	420	.	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	I	P	A	D	Q	F	P	A	Q	A	L	A	C	E	L	Y	K	V	A	G	I	R	A	V	E	I	G	S	F	L	L	G	R	D	P	K	T	G	K	Q	L	P	C	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	L	L	R	L	T	I	P	R	A	T	Y
Query Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.
Template Conservation																																																																													.
Template Sequence		P	L	L	K	D	K	S	S	N	H	L	Y	P	I	L	M	H	Q	K	F	F	T	C	K	K	L	I	L	E	S	L	H	K	R	G	I	L	A	Q	V	H	Y	K	P	I	Y	Q	Y	Q	L	Y	Q	Q	L	F	N	T	A	P	L	K	S	A	E	D	F	Y	H	A	E	I	S	L	P	C	.	H	A	N	L
Template Known Secondary structure		G	G		S	S					S								G	G	G	G	G	G											T	T				B						G	G	G	S																												.		T	T
Template Predicted Secondary structure																																																																													.
Template SS confidence
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.		350	.	.	.
		428	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Q	T	H	M	D	F	I	I	E	A	F	K	H	V	K	E	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	L	E	S	V	Q	N	I	A	H	S	V	L	K	T	F	E	S
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions