Phyre 2 alignment of P0A853 with d2bwna1

Job Description P0A853
Confidence 99.97% Date Thu Jan 5 11:06:55 GMT 2012

Rank 57 Aligned Residues 308

% Identity 13% Template d2bwna1

SCOP info PLP-dependent transferase-like PLP-dependent transferases GABA-aminotransferase-like

Resolution 2.1

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	Y	S	G	S	R	S	Y	Y	A	L	A	E	S	V	K	N	I	F	G	Y	Q	Y	T	I	P	T	H	Q	G	R	G	A	E	Q	I	Y	I	P	V	L	I	K	K	R	E	Q	E	K	G	L	D	R	S	K	M	V	A	F	S	N	Y	F	F	D	T	T	Q	G	H	S	Q	I	N	G	C	T	V	R	N
Query Conservation
Alig confidence																																														.	.	.	.	.	.	.
Template Conservation																																														.	.	.	.	.	.	.
Template Sequence	I	S	G	T	T	A	Y	H	R	R	L	E	A	E	I	A	G	L	H	Q	K	E	A	A	L	V	F	S	S	A	Y	N	A	N	D	A	T	L	S	T	L	R	V	L	F	.	.	.	.	.	.	.	P	G	L	I	I	Y	S	D	S	L	N	H	A	S	M	I	E	G	I	K	R	N	A	G	P	K	R	I
Template Known Secondary structure	T	B																	T	T		S						S																	S	.	.	.	.	.	.	.	T	T							T	T												S
Template Predicted Secondary structure																																														.	.	.	.	.	.	.
Template SS confidence
	86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130								.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.

	153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	V	Y	I	K	E	A	F	D	T	G	V	R	Y	D	F	K	G	N	F	D	L	E	G	L	E	R	G	I	E	E	V	G	P	N	N	V	P	Y	I	V	A	T	I	T	S	N	S	A	G	G	Q	P	V	S	L	A	N	L	K	A	M	Y	S	I	A	K	K	Y	D	I	P	V	V	M	D	S	A	R	F	A
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.
Template Sequence	F	R	H	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	V	A	H	L	R	E	L	I	A	A	D	D	P	A	A	P	K	L	I	A	F	E	S	V	Y	S	M	D	G	.	.	.	.	D	F	G	P	I	K	E	I	C	D	I	A	E	E	F	G	A	L	T	Y	I	D	E	V	H	A	V
Template Known Secondary structure			T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												S		T	T	S								S	B		T	T	T		.	.	.	.		B														T								T	T	T	T
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.
Template SS confidence
	159	160	.	.																.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.					.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.

	233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	E	N	A	Y	F	I	K	Q	R	E	A	E	Y	K	D	W	T	I	E	Q	I	T	R	E	T	Y	K	Y	A	D	M	L	A	M	S	A	K	K	D	A	M	V	P	M	G	G	L	L	C	M	K	D	D	S	F	F	D	V	Y	T	E	C	R	T	L	C	V	V	Q	E	G	F	P	T	Y	G	G	L	E	G
Query Conservation
Alig confidence	.	.	.	.	.	.	.	.	.	.	.																																																								.	.	.	.	.	.	.
Template Conservation	.	.	.	.	.	.	.	.	.	.	.																																																								.	.	.	.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	.	.	.	G	M	Y	G	P	R	G	A	G	V	A	E	R	D	G	L	M	H	R	I	D	I	F	N	G	T	L	A	A	Y	G	V	F	G	G	Y	I	A	A	S	A	R	M	V	D	A	V	R	S	Y	A	P	G	F	I	.	.	.	.	.	.	.	F	S	T	S	L	P	P
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.	.	T	T	S	S	T	T	S								T		G	G	G		S											S																								.	.	.	.	.	.	.	T	S	B
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.																																																								.	.	.	.	.	.	.
Template SS confidence
												220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.								.	.	.	.	.	280	.

	313	.	.	.	.	.	.	320	.	.	.	.	.	.	.				.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.
Query SS confidence																.	.	.
Query Sequence	G	A	M	E	R	L	A	V	G	L	Y	D	G	M	N	.	.	.	L	D	W	L	A	Y	R	I	A	Q	V	Q	Y	L	V	D	G	L	E	E	I	G	V	V	C	Q	Q	A	G	G	H	A	A	F	V	D	A	G	K	L	L	P	H	I	P	A	D	Q	F	P	A	Q	A	L	A	C	E	L	Y	K	V	A
Query Conservation																.	.	.
Alig confidence																.	.	.																																				.	.	.	.	.	.	.	.
Template Conservation																																																						.	.	.	.	.	.	.	.
Template Sequence	A	I	A	A	G	A	Q	A	S	I	A	F	L	K	T	A	E	G	Q	K	L	R	D	A	Q	Q	M	H	A	K	V	L	K	M	R	L	K	A	L	G	M	P	I	I	D	H	G	S	H	I	V	P	V	.	.	.	.	.	.	.	.	V	I	G	D	P	V	H	T	K	A	V	S	D	M	L	L	S	D	Y
Template Known Secondary structure														T	S																									T			B				S	S	S					.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																						.	.	.	.	.	.	.	.
Template SS confidence
	283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.									.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.

	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	I	R	A	V	E	I	G	S	F	L	L	G	R	D	P	K	T	G	K	Q	L	P	C	P	A	E	L	L	R	L	T	I	P	R	A	T	Y	T	Q	T	H	M	D	F	I	I	E	A	F	K	H	V	K
Query Conservation
Alig confidence						.	.	.	.	.	.	.	.	.	.																		.
Template Conservation						.	.	.	.	.	.	.	.	.	.																		.
Template Sequence	G	V	Y	V	Q	.	.	.	.	.	.	.	.	.	.	P	I	N	F	P	T	V	P	R	G	T	E	R	L	R	F	T	.	P	S	P	V	H	D	L	K	Q	I	D	G	L	V	H	A	M	D	L	L	W
Template Known Secondary structure						.	.	.	.	.	.	.	.	.	.				T	T	T	S		T	T								.			T	T	S
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.																		.
Template SS confidence
	355	.	.	.	.											360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.		.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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