Return to main results Retrieve Phyre Job Id

Job DescriptionP0A853
Confidence99.98%DateThu Jan 5 11:06:55 GMT 2012
Rank43Aligned Residues378
% Identity14%Templated1sffa_
SCOP infoPLP-dependent transferase-like PLP-dependent transferases GABA-aminotransferase-like
Resolution1.90

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   10.........20.........30.........40.........50.........60........ .70.........80......
Predicted Secondary structure 



























...







Query SS confidence 


























































. . .

















Query Sequence  PFRIRVIEPVKRTTRAYREEAIIKSGMNPFLLDSEDVFIDLLTDSGTGAVTQSMQAAMM. . . RGDEAYSGSRSYYALAES
Query Conservation 
                

      
 
   
      


 


 
   
     

 ... 

  

 
 
   


 
Alig confidence 






































...........








...

















Template Conservation 
       
    
 

   

         

   
 
........... 

    
                  


 
Template Sequence  PIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKV. . . . . . . . . . . VAAVEAQLKKLSHTCFQVLAYEPYLELCEI
Template Known Secondary structure 


BTTT

SST
TT
BT
...........TTT
S


TTTS

Template Predicted Secondary structure 














...........










Template SS confidence 















































































   24.....30.........40.........50.........60.. .......70.........80.........90..
 
   87..90.. .......100.........110.........120.........130.........140....... .
Predicted Secondary structure 

...
























...............
Query SS confidence 





. . .






















































. . . . . . . . . . . . . . .
Query Sequence  VKNIFG. . . YQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQING. . . . . . . . . . . . . . . C
Query Conservation   
 
 
... 
  
   


 
  

       
                 
  
  
 
   
............... 
Alig confidence 





...























......
























...............
Template Conservation 
           
    




   

  
   ......  
  

     


    
   
                 
Template Sequence  MNQKVPGDFAKKTLLVTTGSEAVENAVKIARAA. . . . . . TKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHV
Template Known Secondary structure  SS
SS
SS......T

TT



SSSS

TTTTTTS



SS
Template Predicted Secondary structure 









......




























Template SS confidence 















































































   93......100.........110.........120..... ....130.........140.........150.........160......
 
   149150.........160.........170.........180... ......190.........200.........210.........220.......
Predicted Secondary structure 



















.


















Query SS confidence 


































.











































Query Sequence  TVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEV. GPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMD
Query Conservation      
               
 

   
   
   .       
 
    
  

       
  
  

   
  
  
Alig confidence 















.......











.











































Template Conservation                  .......    
   
         





      
        
  
  
    
  

 
Template Sequence  YRALYPCPLHGISEDD. . . . . . . AIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIAD
Template Known Secondary structure 


BGGGTB
.......T

GGG
SB
TTTTS
B

T
Template Predicted Secondary structure 













.......




















Template SS confidence 















































































   167..170.........180.. .......190.........200.........210.........220.........230.........
 
   228.230.........240.........250.........260.........270.........280.........290.........300.......
Predicted Secondary structure 







































Query SS confidence 















































































Query Sequence  SARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTY
Query Conservation   

             
        
        
  
 
  
  
 
 

 
   
                  
    
Alig confidence 



............








































........














Template Conservation 

  ............
    
        
   

   

 
              ........            
  
Template Sequence  EVQS. . . . . . . . . . . . GAGRTGTLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAE. . . . . . . . VMDAVAPGGLGGTYA
Template Known Secondary structure 
TTT............TTTTTSSSSGGGGTTS

S
GGGGTSS

........TTS
TTSS

SSS
Template Predicted Secondary structure 



............





















........






Template SS confidence 















































































   240... ......250.........260.........270.........280.... .....290.........
 
   308.310.........320....... ..330.........340.........350... ......360.........370.........380....
Predicted Secondary structure 





.





..


















Query SS confidence 



















.

























. .






























Query Sequence  GGLEGGAMERLAVGLYDGMN. LDWLAYRIAQVQYLVDGLEEIGVVCQ. . QAGGHAAFVDAGKLLPHIPADQFPAQALACE
Query Conservation 

       
 
 

     .   
         
   
   
  
 ..  


 
 

     
               
Alig confidence 



















.

























..






























Template Conservation        
   
                           
      
  
   
                           
Template Sequence  GNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVAR
Template Known Secondary structure  S
TTT
TTTTBGGG
TTSB
Template Predicted Secondary structure 




















Template SS confidence 















































































   300.........310.........320.........330.........340.........350.........360.........370.........
 
   385....390.........400.........410.........420.........430.........440........
Predicted Secondary structure 
























Query SS confidence 































































Query Sequence  LYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAAN
Query Conservation 
    

                          


 

    
 



    

  
      
Alig confidence 



.




...............











.

























Template Conservation 
   .

 
 ...............        

  .     
 
 
   
  
   
 
   
Template Sequence  ARDK. GLILL. . . . . . . . . . . . . . . SCGPYYNVLRIL. VPLTIEDAQIRQGLEIISQCFDEAKQ
Template Known Secondary structure  T.T
...............STTS

.

TT



Template Predicted Secondary structure 
.
...............




.






Template SS confidence 































































   380... ..... .390.........400 .........410.........420......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions