Job Description P0A853 Confidence 100.00% Date Thu Jan 5 11:06:55 GMT 2012 Rank 14 Aligned Residues 355 % Identity 16% Template d1rv3a_ SCOP info PLP-dependent transferase-like PLP-dependent transferases GABA-aminotransferase-like Resolution 2.40

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		57	.	.	60	.	.	.	.	.	.	.	.												.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.					.	.	.	.	.	90	.	.	.	.					.	.		.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.											.	.	.	.			.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.											.	.	.	.			.
Query Sequence		G	A	V	T	Q	S	M	Q	A	A	M	M	.	.	.	.	.	.	.	.	.	.	.	R	G	D	E	A	Y	S	G	S	R	S	Y	Y	A	L	A	.	.	.	.	E	S	V	K	N	I	F	G	Y	Q	.	.	.	.	Y	T	.	I	P	T	H	Q	G	R	G	A	E	Q	I	Y	I	P	V	L	I	K	K
Query Conservation														.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.											.	.	.	.			.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.											.	.	.	.			.
Template Conservation
Template Sequence		N	F	A	S	R	A	V	L	E	A	L	G	S	C	L	N	N	K	Y	S	L	G	Y	P	G	Q	R	Y	Y	G	G	T	E	H	I	D	E	L	E	T	L	C	Q	K	R	A	L	Q	A	Y	G	L	D	P	Q	C	W	G	V	N	V	Q	P	Y	S	G	S	P	A	N	F	A	V	Y	T	A	L	V	E	P
Template Known Secondary structure													T	S	G	G	G	T							T	T			S	S	S																				T	T			T	T	T								S	S													T		T
Template Predicted Secondary structure
Template SS confidence
		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	Q	E	K	G	L	D	R	S	K	M	V	A	F	S	N	Y	F	F	D	T	T	Q	G	H	S	Q	I	N	G	C	T	V	R	N	V	Y	I	K	E	A	F	D	T	G	V	R	Y	D	F	K	G	N	F	D	L	E	G	L	E	R	G	I	E	E	V	G	P	N	N	V	P	Y	I	V	A	T	I	T
Query Conservation
Alig confidence																						.																					.	.	.	.	.	.	.																							.	.	.
Template Conservation																						.																					.	.	.	.	.	.	.																							.	.	.
Template Sequence		H	G	R	I	M	G	L	D	L	P	D	G	G	H	L	T	H	G	F	M	.	T	D	K	K	K	I	S	A	T	S	I	F	F	E	S	M	A	Y	K	V	.	.	.	.	.	.	.	N	P	D	T	G	Y	I	D	Y	D	R	L	E	E	N	A	R	L	F	H	P	K	.	.	.	L	I	I	A	G	T	S
Template Known Secondary structure		T								G	G	G	T			G	G	G			B	.		S	S		B		S						S							B	.	.	.	.	.	.	.		T	T	T		S	B															S	.	.	.							S
Template Predicted Secondary structure																						.																					.	.	.	.	.	.	.																							.	.	.
Template SS confidence
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.		.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.								.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.				.	.	.	200	.	.	.
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	N	S	A	G	G	Q	P	V	S	L	A	N	L	K	A	M	Y	S	I	A	K	K	Y	D	I	P	V	V	M	D	S	A	R	F	A	E	N	A	Y	F	I	K	Q	R	E	A	E	Y	K	D	W	T	I	E	Q	I	T	R	E	T	Y	K	Y	A	D	M	L	A	M	S	A	K	K	D	A	M	V	P	M
Query Conservation
Alig confidence								.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		C	Y	S	R	N	L	.	.	.	.	.	.	D	Y	G	R	L	R	K	I	A	D	E	N	G	A	Y	L	M	A	D	M	A	H	I	S	G	L	V	V	A	G	V	V	P	S	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	E	H	C	H	V	V	T	T	T	T	H	K	T	L	R	G	C	R
Template Known Secondary structure		S			S			.	.	.	.	.	.												T	T								T	T	T							T	S	S			G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	T		S						S	S	G	G	G				S
Template Predicted Secondary structure								.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		204	.	.	.	.	.							210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.															.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.				.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure																																																						.	.	.
Query SS confidence																																																						.	.	.
Query Sequence		G	G	L	L	C	M	K	D	D	S	F	F	D	V	Y	T	E	C	R	T	L	C	V	V	Q	E	G	F	P	T	Y	G	G	L	E	G	G	A	M	E	R	L	A	V	G	L	Y	D	G	M	N	L	.	.	.	D	W	L	A	Y	R	I	A	Q	V	Q	Y	L	V	D	G	L	E	E	I	G	V	V	C	Q
Query Conservation																																																						.	.	.
Alig confidence																																																						.	.	.
Template Conservation
Template Sequence		A	G	M	I	F	Y	R	R	G	V	R	S	E	I	L	Y	N	L	E	S	L	I	N	S	A	V	F	P	G	L	Q	G	G	P	H	N	H	A	I	A	G	V	A	V	A	L	K	Q	A	M	T	P	E	F	K	E	Y	Q	R	Q	V	V	A	N	C	R	A	L	S	A	A	L	V	E	L	G	Y	K	I	V
Template Known Secondary structure										S	B					B												T	T	T	T			S																	T	S																								T	T				G
Template Predicted Secondary structure
Template SS confidence
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
				354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420				.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.																																																																				.	.	.
Query SS confidence		.	.																																																																				.	.	.
Query Sequence		.	.	Q	A	G	G	H	A	A	F	V	D	A	G	K	L	L	P	H	I	P	A	D	Q	F	P	A	Q	A	L	A	C	E	L	Y	K	V	A	G	I	R	A	V	E	I	G	S	F	L	L	G	R	D	P	K	T	G	K	Q	L	P	C	P	A	E	L	L	R	L	.	.	.	T	I	P	R	A	T	Y	T
Query Conservation		.	.																																																																				.	.	.
Alig confidence		.	.															.	.	.	.	.	.	.												.							.	.	.	.	.	.	.	.																					.	.	.
Template Conservation																		.	.	.	.	.	.	.												.							.	.	.	.	.	.	.	.
Template Sequence		T	G	G	S	D	N	H	L	I	L	V	D	L	R	S	K	.	.	.	.	.	.	.	G	T	D	G	G	R	A	E	K	V	L	.	E	A	C	S	I	A	.	.	.	.	.	.	.	.	C	N	K	N	T	C	P	G	D	K	S	A	L	R	P	S	G	L	R	L	G	T	P	A	L	T	S	R	G	L	L
Template Known Secondary structure		G	G	S		S	S	S						G	G	G	G	.	.	.	.	.	.	.	T											.			T	T			.	.	.	.	.	.	.	.							S	S		S		T	T	S														T	T
Template Predicted Secondary structure																		.	.	.	.	.	.	.												.							.	.	.	.	.	.	.	.
Template SS confidence
		351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.								.	.	.	370	.	.	.	.	.	.	.		.	.	380	.	.	.									.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
		429	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	T	H	M	D	F	I	I	E	A	F	K	H	V	K	E	N	A	A	N	I	K	G	L	T	F	T	Y	E	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	K	D	F	Q	K	V	A	H	F	I	H	R	G	I	E	L	T	V	Q	I	Q	D	D	T	G	P	R	A	T
Template Known Secondary structure																									T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		415	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions