Phyre 2 alignment of P0A853 with d1pffa

Job Description P0A853
Confidence 99.78% Date Thu Jan 5 11:06:55 GMT 2012

Rank 216 Aligned Residues 302

% Identity 17% Template d1pffa_

SCOP info PLP-dependent transferase-like PLP-dependent transferases Cystathionine synthase-like

Resolution 2.50

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	L	A	E	S	V	K	N	I	F	G	Y	Q	Y	T	I	P	T	H	Q	G	R	G	A	E	Q	I	Y	I	P	V	L	I	K	K	R	E	Q	E	K	G	L	D	R	S	K	M	V	A	F	S	N	Y	F	F	D	T	T	Q	G	H	S	Q	I	N	G	C	T	V	R	N	V	Y	I	K	E	A	F	D	T
Query Conservation
Alig confidence																																																				.	.	.	.	.																				.	.	.	.	.
Template Conservation																																																				.	.	.	.	.																				.	.	.	.	.
Template Sequence	A	L	E	G	K	I	A	K	L	E	H	A	E	A	C	A	A	T	A	S	G	M	G	A	I	A	A	S	V	W	T	F	L	K	A	G	D	H	L	I	S	D	D	C	L	Y	G	C	T	H	A	.	.	.	.	.	L	F	E	H	Q	L	R	K	F	G	V	E	V	D	F	I	D	M	A	.	.	.	.	.
Template Known Secondary structure											T		S						S	S															T	T							S									.	.	.	.	.				T					T	T								T	T	.	.	.	.	.
Template Predicted Secondary structure																																																				.	.	.	.	.																				.	.	.	.	.
Template SS confidence
	66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.						.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.

	162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	V	R	Y	D	F	K	G	N	F	D	L	E	G	L	E	R	G	I	E	E	V	G	P	N	N	V	P	Y	I	V	A	T	I	T	S	N	S	A	G	G	Q	P	V	S	L	A	N	L	K	A	M	Y	S	I	A	K	K	Y	D	I	P	V	V	M	D	S	A	R	F	A	E	N	A	Y	F	I	K	Q	R
Query Conservation
Alig confidence	.	.	.	.	.	.	.	.	.	.												.	.	.	.															.													.	.
Template Conservation	.	.	.	.	.	.	.	.	.	.												.	.	.	.															.													.	.
Template Sequence	.	.	.	.	.	.	.	.	.	.	V	P	G	N	I	E	K	H	L	K	P	.	.	.	.	N	T	R	I	V	Y	F	E	T	P	A	N	P	T	.	L	K	V	I	D	I	E	D	A	V	K	Q	.	.	A	R	K	Q	K	D	I	L	V	I	V	D	N	T	F	A	S	P	I	L	T	N	P	L	D	L
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.	S	T	T					T			T	.	.	.	.	T								S	S		T	T	T	.													.	.		T	T	S	S	S								T	T	T							G	G	G	G
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.												.	.	.	.															.													.	.
Template SS confidence
											136	.	.	.	140	.	.	.	.	.	.					.	.	.	150	.	.	.	.	.	.	.	.	.	160		.	.	.	.	.	.	.	.	.	170	.	.			.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.

	242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.				.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.
Query SS confidence																																					.	.	.
Query Sequence	E	A	E	Y	K	D	W	T	I	E	Q	I	T	R	E	T	Y	K	Y	A	D	M	L	A	M	S	A	K	K	D	A	M	V	P	M	G	.	.	.	G	L	L	C	M	K	D	D	S	F	F	D	V	Y	T	E	C	R	T	L	C	V	V	Q	E	G	F	P	T	Y	G	G	L	E	G	G	A	M	E	R	L
Query Conservation																																					.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.																						.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.
Template Sequence	G	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	I	V	V	H	S	A	T	K	Y	I	N	G	H	T	D	V	V	A	G	L	V	C	S	R	A	D	I	I	A	K	V	K	S	Q	G	I	K	D	I	.	.	.	.	.	.	.	T	G	A	I	I	S	P	H	D	A	W	L	I
Template Known Secondary structure	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S						T	T	T	T	T	S	S	S	S	S																			T						.	.	.	.	.	.	.
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.
Template SS confidence
	199	200																			.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240								.	.	.	.	.	.	.	.	.	250	.	.	.

	319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.								.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure																																		.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.
Query Sequence	A	V	G	L	Y	D	G	M	N	L	D	W	L	A	Y	R	I	A	Q	V	Q	Y	L	V	D	G	L	E	E	I	G	V	V	.	.	.	.	.	.	.	C	Q	Q	A	G	G	H	A	A	F	V	D	A	G	K	L	L	P	H	I	P	A	D	Q	F	P	A	Q	A	L	A	C	E	L	Y	K	V	A	G	I
Query Conservation																																		.	.	.	.	.	.	.
Alig confidence								.	.																									.	.	.	.	.	.	.
Template Conservation								.	.
Template Sequence	T	R	G	T	L	T	L	.	.	D	M	R	V	K	R	A	A	E	N	A	Q	K	V	A	E	F	L	H	E	H	K	A	V	K	K	V	Y	Y	P	G	L	P	D	H	P	G	H	E	I	A	K	K	Q	M	K	M	F	G	S	M	I	A	F	D	V	D	G	L	E	K	A	K	K	V	L	D	N	C	H	V
Template Known Secondary structure								.	.																						T	T							T	T	S	T	T	S	T	T									S	S			S							S	S										T		S	S
Template Predicted Secondary structure								.	.
Template SS confidence
	254	.	.	.	.	.	260			.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.

	392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.																			.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	R	A	V	E	I	G	S	F	L	L	G	R	D	P	K	T	G	K	Q	L	P	C	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	L	L	R	L	T	I	P	R	A	T	Y	T	Q	T	H	M	D	F	I	I	E	A	F	K	H	V	K
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Template Conservation		.	.	.	.	.																																																.
Template Sequence	V	.	.	.	.	.	S	L	A	V	S	L	G	G	P	E	S	L	I	Q	H	P	A	S	M	T	H	A	G	V	P	K	E	E	R	E	A	A	G	L	T	D	N	L	I	R	L	S	V	G	C	E	N	.	V	Q	D	I	I	D	D	L	K	Q	A	L	D	L	V	L
Template Known Secondary structure	S	.	.	.	.	.				S	S			S	S	S										T	S	T	T	S								T	T			T	T								S	S		.														T		.
Template Predicted Secondary structure		.	.	.	.	.																																																.
Template SS confidence
	333						.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380		.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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