Phyre 2 alignment of P0A853 with d1gc0a

Job Description P0A853
Confidence 99.91% Date Thu Jan 5 11:06:55 GMT 2012

Rank 104 Aligned Residues 307

% Identity 16% Template d1gc0a_

SCOP info PLP-dependent transferase-like PLP-dependent transferases Cystathionine synthase-like

Resolution 1.70

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	Y	S	G	S	R	S	Y	Y	A	L	A	E	S	V	K	N	I	F	G	Y	Q	Y	T	I	P	T	H	Q	G	R	G	A	E	Q	I	Y	I	P	V	L	I	K	K	R	E	Q	E	K	G	L	D	R	S	K	M	V	A	F	S	N	Y	F	F	D	T	T	Q	G	H	S	Q	I	N	G	C	T	V	R	N
Query Conservation
Alig confidence																																																													.	.	.	.	.
Template Conservation																																																													.	.	.	.	.
Template Sequence	T	F	P	S	N	P	T	L	N	L	L	E	A	R	M	A	S	L	E	G	G	E	A	G	L	A	L	A	S	G	M	G	A	I	T	S	T	L	W	T	L	L	R	P	G	D	E	V	L	L	G	N	T	L	Y	G	C	T	F	A	.	.	.	.	.	F	L	H	H	G	I	G	E	F	G	V	K	L	R	H
Template Known Secondary structure																				T		S						S	S															T	T							S	S			S					.	.	.	.	.					T	G	G	G	G	T
Template Predicted Secondary structure																																																													.	.	.	.	.
Template SS confidence
	39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.						.	100	.	.	.	.	.	.	.	.	.	110	.	.	.

	153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	V	Y	I	K	E	A	F	D	T	G	V	R	Y	D	F	K	G	N	F	D	L	E	G	L	E	R	G	I	E	E	V	G	P	N	N	V	P	Y	I	V	A	T	I	T	S	N	S	A	G	G	Q	P	V	S	L	A	N	L	K	A	M	Y	S	I	A	K	K	Y	D	I	P	V	V	M	D	S	A	R	F	A
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.																.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.																.	.	.	.
Template Sequence	V	D	M	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	L	Q	A	L	E	A	A	M	T	P	.	.	.	.	A	T	R	V	I	Y	F	E	S	P	A	N	P	N	M	.	.	.	.	H	M	A	D	I	A	G	V	A	K	I	A	R	K	H	G	A	T	V	V	V	D	N	T	Y	C	T
Template Known Secondary structure			T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											T	.	.	.	.	T								S	S		T	T	T		.	.	.	.													G	G	G	T								T	T	T
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.																.	.	.	.
Template SS confidence
	135	.	.	.																.	140	.	.	.	.	.	.	.	.	.					150	.	.	.	.	.	.	.	.	.	160	.	.	.	.					.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.

	233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.			.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure																																														.	.
Query SS confidence																																														.	.
Query Sequence	E	N	A	Y	F	I	K	Q	R	E	A	E	Y	K	D	W	T	I	E	Q	I	T	R	E	T	Y	K	Y	A	D	M	L	A	M	S	A	K	K	D	A	M	V	P	M	G	.	.	G	L	L	C	M	K	D	D	S	F	F	D	V	Y	T	E	C	R	T	L	C	V	V	Q	E	G	F	P	T	Y	G	G	L
Query Conservation																																														.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.																						.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.
Template Sequence	P	Y	L	Q	R	P	L	E	L	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	L	V	V	H	S	A	T	Y	L	S	G	H	G	D	I	T	A	G	I	V	V	G	S	Q	A	L	V	D	R	I	R	L	Q	G	L	K	D	M	.	.	.	.	.	.	.	T	G	A	V	L
Template Known Secondary structure						G	G	G	G	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S										S		S	S	S																			T						.	.	.	.	.	.	.	T
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.
Template SS confidence
	192	.	.	.	.	.	.	.	200	.	.																			.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.								.	.	.	.	.

	311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.				.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure																																												.	.	.
Query SS confidence																																												.	.	.
Query Sequence	E	G	G	A	M	E	R	L	A	V	G	L	Y	D	G	M	N	L	D	W	L	A	Y	R	I	A	Q	V	Q	Y	L	V	D	G	L	E	E	I	G	V	V	C	Q	.	.	.	Q	A	G	G	H	A	A	F	V	D	A	G	K	L	L	P	H	I	P	A	D	Q	F	P	A	Q	A	L	A	C	E	L	Y	K
Query Conservation																																												.	.	.
Alig confidence																.	.																											.	.	.											.	.	.	.	.	.	.
Template Conservation																.	.																																								.	.	.	.	.	.	.
Template Sequence	S	P	H	D	A	A	L	L	M	R	G	I	K	T	L	.	.	N	L	R	M	D	R	H	C	A	N	A	Q	V	L	A	E	F	L	A	R	Q	P	Q	V	E	L	I	H	Y	P	Q	P	G	G	M	I	A	F	E	.	.	.	.	.	.	.	L	K	G	G	I	G	A	G	R	R	F	M	N	A	L	Q	L
Template Known Secondary structure													T	T		.	.																				T		T	T										T	T						.	.	.	.	.	.	.		T	T													S	S
Template Predicted Secondary structure																.	.																																								.	.	.	.	.	.	.
Template SS confidence
	248	.	250	.	.	.	.	.	.	.	.	.	260	.	.			.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.								.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.

	388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.										.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.
Query Sequence	V	A	G	I	R	A	V	E	I	G	S	F	L	L	G	R	D	P	K	T	G	K	Q	L	P	C	.	.	.	.	.	.	.	.	.	P	A	E	L	L	R	L	T	I	P	R	A	T	Y	T	Q	T	H	M	D	F	I	I	E	A	F	K	H	V
Query Conservation																											.	.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.	.	.														.
Template Conservation																																																	.
Template Sequence	F	S	R	A	V	S	L	G	D	A	E	S	L	A	Q	H	P	A	S	M	T	H	S	S	Y	T	P	E	E	R	A	H	Y	G	I	S	E	G	L	V	R	L	S	V	G	L	E	D	.	I	D	D	L	L	A	D	V	Q	Q	A	L	K	A	S
Template Known Secondary structure	S				S			S		S	S						G	G	G	T	T	T	S	S	S								T	T			T	T								S	S		.
Template Predicted Secondary structure																																																	.
Template SS confidence
	335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.		.	.	.	.	.	.	.	390	.	.	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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