Job Description P0A853 Confidence 99.69% Date Thu Jan 5 11:06:55 GMT 2012 Rank 230 Aligned Residues 325 % Identity 11% Template d1bjna_ SCOP info PLP-dependent transferase-like PLP-dependent transferases GABA-aminotransferase-like Resolution 2.30

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		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.																80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.					.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.
Query Sequence		G	T	G	A	V	T	Q	S	M	Q	A	A	M	M	R	G	D	E	A	Y	S	G	S	R	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	Y	A	L	A	E	S	V	K	N	I	F	G	Y	Q	Y	.	.	.	.	T	I	P	T	H	Q	G	R	G	A	E	Q	I	Y	I	P	V	L	I	K
Query Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.
Template Conservation
Template Sequence		G	P	A	M	L	P	A	E	V	L	K	Q	A	Q	Q	E	L	R	D	W	N	G	L	G	T	S	V	M	E	V	S	H	R	G	K	E	F	I	Q	V	A	E	E	A	E	K	D	F	R	D	L	L	N	V	P	S	N	Y	K	V	L	F	C	H	G	G	G	R	G	Q	F	A	A	V	P	L	N	I	L	G
Template Known Secondary structure		S	S														T	S	S	S	G	G	G	S	S	S		G	G	G	S		T	T	S																			T			T	T							S	S															T
Template Predicted Secondary structure
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	R	E	Q	E	K	G	L	D	R	S	K	M	V	A	F	S	N	Y	F	F	D	T	T	Q	G	H	S	Q	I	N	G	C	T	V	R	N	V	Y	I	K	E	A	F	D	T	G	V	R	Y	D	F	K	G	N	F	D	L	E	G	L	E	R	G	I	E	E	V	G	P	N	N	V	P	Y	I	V	A	T	I
Query Conservation
Alig confidence														.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.																.	.	.	.
Template Conservation														.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.																.	.	.	.
Template Sequence		D	K	T	T	A	D	Y	V	D	A	G	Y	.	.	.	.	.	.	.	W	A	A	S	A	I	K	E	A	K	K	Y	C	T	P	N	V	F	D	A	K	V	T	.	.	.	.	.	.	.	.	.	.	V	D	G	L	R	A	V	K	P	M	R	E	W	Q	L	.	.	.	.	S	D	N	A	A	Y	M	H	Y
Template Known Secondary structure		T									S	S		.	.	.	.	.	.	.										T	T	T	S											.	.	.	.	.	.	.	.	.	.		T	T							G	G	G				.	.	.	.		S	S		S
Template Predicted Secondary structure														.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.																.	.	.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.								.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.											.	.	.	.	.	130	.	.	.	.	.	.	.	.	.					140	.	.	.	.	.	.	.	.
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	S	N	S	A	G	G	Q	P	V	S	L	A	N	L	K	A	M	Y	S	I	A	K	K	Y	D	I	P	V	V	M	D	S	A	R	F	A	E	N	A	Y	F	I	K	Q	R	E	A	E	Y	K	D	W	T	I	E	Q	I	T	R	E	T	Y	K	Y	A	D	M	L	A	M	S	A	K	K	D	A	M	V	P
Query Conservation
Alig confidence							.													.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Template Conservation							.													.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Template Sequence		C	P	N	E	T	.	I	D	G	I	A	I	D	E	T	P	D	F	.	.	.	.	.	G	A	D	V	V	V	A	A	D	F	S	S	T	I	L	S	R	P	I	D	V	S	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	G	V	I	Y	A	G	A	Q	N	.	I	G	P	A
Template Known Secondary structure			S			T	.	T	T	T										.	.	.	.	.		T	T								T	T	T	T	T	S	S				G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S									.		S	S	T
Template Predicted Secondary structure							.													.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Template SS confidence
		149	150	.	.	.		.	.	.	.	.	.	160	.	.	.	.	.						.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.																				.	190	.	.	.	.	.	.	.	.		.	200	.	.
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290				.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure																	.	.	.
Query SS confidence																	.	.	.
Query Sequence		M	G	G	L	L	C	M	K	D	D	S	F	F	D	V	.	.	.	Y	T	E	C	R	T	L	C	V	V	Q	E	G	F	P	T	Y	G	G	L	E	G	G	A	M	E	R	L	A	V	G	L	Y	D	G	M	N	L	D	W	L	A	Y	R	I	A	Q	V	Q	Y	L	V	D	G	L	E	E	I	G	V	V	C
Query Conservation																	.	.	.
Alig confidence																	.	.	.																																																											.	.	.
Template Conservation																																																																														.	.	.
Template Sequence		G	L	T	I	V	I	V	R	E	D	L	L	G	K	A	N	I	A	C	P	S	I	L	D	Y	S	I	L	N	D	N	G	S	M	F	N	T	P	P	T	F	A	W	Y	L	S	G	L	V	F	K	W	L	K	A	N	G	G	V	A	E	M	D	K	I	N	Q	Q	K	A	E	L	L	Y	G	V	.	.	.	I
Template Known Secondary structure		T								G	G	G		S				T	T	S		G	G	G								T	T	T		S	S																				T	T																				.	.	.
Template Predicted Secondary structure																																																																														.	.	.
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.				280
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.				.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.
Query SS confidence																															.	.	.
Query Sequence		Q	Q	A	G	G	H	A	A	F	V	D	A	G	K	L	L	P	H	I	P	A	D	Q	F	P	A	Q	A	L	.	.	.	A	C	E	L	Y	K	V	A	G	I	R	A	V	E	I	G	S	F	L	L	G	R	D	P	K	T	G	K	Q	L	P	C	P	A	E	L	L	R	L	T	I	P	R	A	T	Y	T	Q
Query Conservation																															.	.	.
Alig confidence																															.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.
Template Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.
Template Sequence		D	N	S	D	F	Y	R	N	D	V	A	K	R	N	R	S	R	M	N	V	P	F	Q	L	A	D	S	A	L	D	K	L	F	L	E	E	S	F	A	A	G	L	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	K	G	H	R	V	V	G	G	M	R	A	S	I	Y	N	A	M	.	P	L
Template Known Secondary structure					S	S					B		G	G	G	B		S	S							S	S	G	G	G											T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			B			T	T	T		S							T	T	S	.
Template Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.
Template SS confidence
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.																.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.		.	.
		430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	H	M	D	F	I	I	E	A	F	K	H	V	K	E	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	G	V	K	A	L	T	D	F	M	V	E	F	E	R	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions