Job Description P0A853 Confidence 99.97% Date Thu Jan 5 11:06:55 GMT 2012 Rank 56 Aligned Residues 341 % Identity 14% Template c3pj0D_ PDB info PDB header:lyase Chain: D: PDB Molecule:lmo0305 protein; PDBTitle: crystal structure of a putative l-allo-threonine aldolase (lmo0305)2 from listeria monocytogenes egd-e at 1.80 a resolution Resolution 1.80 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.						.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure																																											.	.	.	.	.
Query SS confidence																																											.	.	.	.	.
Query Sequence		E	E	A	I	I	K	S	G	M	N	P	F	L	L	D	S	E	D	V	F	I	D	L	L	T	D	S	G	T	G	A	V	T	Q	S	M	Q	A	A	M	M	.	.	.	.	.	R	G	D	E	A	Y	S	G	S	R	S	Y	Y	A	L	A	E	S	V	K	N	I	F	G	Y	Q	Y	T	I	P	T	H	Q	G
Query Conservation																																											.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	T	L	K	T	S	Y	Q	K	T	P	Y	K	L	G	G	N	G	P	R	N	.	.	.	.	.	.	.	.	.	.	.	V	G	V	L	T	E	A	L	Q	N	I	D	D	N	L	E	S	D	I	Y	G	N	G	A	V	I	E	D	F	E	T	K	I	A	K	I	L	G	K	Q	S	A	V	F	F	P	S	G
Template Known Secondary structure												S			S	S	B	S	S			S	.	.	.	.	.	.	.	.	.	.	.								T	T	T	S		T	T					B	T	T	B	S															T		S						S
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.												.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
		103	.	.	.	.	.	.	110	.	.	.	.			.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure														.	.
Query SS confidence														.	.
Query Sequence		R	G	A	E	Q	I	Y	I	P	V	L	I	.	.	K	K	R	E	Q	E	K	G	L	D	R	S	K	M	V	A	F	S	N	Y	F	F	D	T	T	Q	G	H	S	Q	I	N	G	C	T	V	R	N	V	Y	I	K	E	A	F	D	T	G	V	R	Y	D	F	K	G	N	F	D	L	E	G	L	E	R	G	I
Query Conservation														.	.
Alig confidence														.	.															.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	X	A	Q	Q	I	A	L	R	I	W	A	D	R	K	E	N	R	R	V	A	Y	H	P	L	S	H	L	.	.	.	.	.	.	E	I	H	E	Q	D	G	L	K	E	L	Q	Q	I	T	P	L	L	L	G	T	A	N	.	.	.	.	.	.	.	.	.	.	.	Q	L	L	T	I	D	D	I	K	S	L	R
Template Known Secondary structure																	T								T	T				.	.	.	.	.	.			S	S	T	T														S		T	T	.	.	.	.	.	.	.	.	.	.	.	S									T		S
Template Predicted Secondary structure																														.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.							100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.												.	.	.	.	.	.	.	130	.	.	.	.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure
Query SS confidence
Query Sequence		E	E	V	G	P	N	N	V	P	Y	I	V	A	T	I	T	S	N	S	A	G	G	Q	P	V	S	L	A	N	L	K	A	M	Y	S	I	A	K	K	Y	D	I	P	V	V	M	D	S	A	R	F	A	E	N	A	Y	F	I	K	Q	R	E	A	E	Y	K	D	W	T	I	E	Q	I	T	R	E	T	Y	K	Y
Query Conservation
Alig confidence			.	.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	.	.	.	.	.	P	V	S	S	V	L	I	E	L	P	Q	R	E	I	G	G	Q	L	P	A	F	E	E	L	E	K	I	S	E	Y	C	H	E	Q	G	I	S	L	H	L	D	G	A	R	L	W	E	I	T	P	.	.	.	.	.	.	.	.	.	.	.	.	F	Y	Q	K	S	A	E	E	I	C	A	L
Template Known Secondary structure		S	.	.	.	.	.			S						S	S	B	G	G	G	T	S	B																		T								T	T		G	G	G			.	.	.	.	.	.	.	.	.	.	.	.			T								T	T
Template Predicted Secondary structure			.	.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		135						.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.													.	.	.	.	190	.	.	.	.	.	.	.
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	M	L	A	M	S	A	K	K	D	A	M	V	P	M	G	G	L	L	C	M	K	D	D	S	F	F	D	V	Y	T	E	C	R	T	L	C	V	V	Q	E	G	F	P	T	Y	G	G	L	E	G	G	A	M	E	R	L	A	V	G	L	Y	D	G	M	N	L	D	W	L	A	Y	R	I	A	Q	V	Q	Y
Query Conservation
Alig confidence																	.																					.	.	.	.	.	.	.	.	.
Template Conservation																	.																					.	.	.	.	.	.	.	.	.
Template Sequence		F	D	S	V	Y	V	S	F	Y	G	I	G	G	I	A	.	G	A	I	L	A	G	N	D	D	F	V	Q	E	A	K	I	W	K	R	R	.	.	.	.	.	.	.	.	.	Y	G	G	D	L	I	S	L	Y	P	Y	I	L	S	A	D	Y	Y	F	E	K	R	I	G	K	X	A	E	Y	F	E	A	A	K	G
Template Known Secondary structure			S												S	S	.																					.	.	.	.	.	.	.	.	.	T	T				S																	G	G	G
Template Predicted Secondary structure																	.																					.	.	.	.	.	.	.	.	.
Template SS confidence
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.		.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.										.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
		341	.	.	.	.	.	.	.		.	350	.	.	.	.			.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
Predicted Secondary structure										.							.	.
Query SS confidence										.							.	.
Query Sequence		L	V	D	G	L	E	E	I	.	G	V	V	C	Q	Q	.	.	A	G	G	H	A	A	F	V	D	A	G	K	L	L	P	H	I	P	A	D	Q	F	P	A	Q	A	L	A	C	E	L	Y	K	V	A	G	I	R	A	V	E	I	G	S	F	L	L	G	R	D	P	K	T	G	K	Q	L	P	C	P	A	E	L
Query Conservation										.							.	.
Alig confidence										.							.	.										.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	A	E	R	F	N	S	C	S	G	V	K	T	V	P	E	V	P	V	S	N	X	F	H	V	Y	.	.	.	.	.	.	.	F	E	N	S	A	D	E	I	G	A	I	L	T	K	I	Q	D	E	T	G	V	G	I	S	.	.	.	.	.	.	.	.	.	.	.	G	Y	L	Q	E	K	S	A	D	V	C	A
Template Known Secondary structure								T	S	T	T					S	S	S		S	S	S						.	.	.	.	.	.	.		S	S																						.	.	.	.	.	.	.	.	.	.	.	S							T	T
Template Predicted Secondary structure																												.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.								.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.												.	320	.	.	.	.	.	.	.	.	.	330
		418	.	420	.	.			.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.
Predicted Secondary structure							.	.
Query SS confidence							.	.
Query Sequence		L	R	L	T	I	.	.	P	R	A	T	Y	T	Q	T	H	M	D	F	I	I	E	A	F	K	H
Query Conservation							.	.
Alig confidence							.	.
Template Conservation
Template Sequence		F	E	V	S	V	G	D	A	F	A	E	I	P	A	K	N	L	E	L	V	F	R	C	L	E	K
Template Known Secondary structure						B		G	G	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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