Phyre 2 alignment of P0A853 with c3pdxA

Job Description P0A853
Confidence 99.88% Date Thu Jan 5 11:06:55 GMT 2012

Rank 143 Aligned Residues 359

% Identity 16% Template c3pdxA_

PDB info PDB header:transferase Chain: A: PDB Molecule:tyrosine aminotransferase; PDBTitle: crystal structural of mouse tyrosine aminotransferase

Resolution 2.91 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.		.	60	.	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.								.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure																											.																.																				.	.	.	.	.	.	.
Query SS confidence																											.																.																				.	.	.	.	.	.	.
Query Sequence	K	S	G	M	N	P	F	L	L	D	S	E	D	V	F	I	D	L	L	T	D	S	G	T	G	A	.	V	T	Q	S	M	Q	A	A	M	M	R	G	D	E	A	.	Y	S	G	S	R	S	Y	Y	A	L	A	E	S	V	K	N	I	F	G	.	.	.	.	.	.	.	Y	Q	Y	T	I	P	T	H	Q	G	R
Query Conservation																											.																.																				.	.	.	.	.	.	.
Alig confidence															.	.											.																.																				.	.	.	.	.	.	.
Template Conservation															.	.
Template Sequence	N	P	N	K	T	V	I	S	L	S	I	G	D	P	.	.	T	V	F	G	N	L	P	T	D	P	E	V	T	Q	A	M	K	D	A	L	D	S	G	K	Y	N	G	Y	A	P	S	I	G	Y	L	S	S	R	E	E	V	A	S	Y	Y	H	C	P	E	A	P	L	E	A	K	D	V	I	L	T	S	G	C	S
Template Known Secondary structure		T	T	S						S				T	.	.	T	S	S	S	S	S																T	T		S	S	S				T	T													T			S	S	S				G	G	G					S	S
Template Predicted Secondary structure															.	.
Template SS confidence
	68	.	70	.	.	.	.	.	.	.	.	.	80	.			.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.

	104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	A	E	Q	I	Y	I	P	V	L	I	K	K	R	E	Q	E	K	G	L	D	R	S	K	M	V	A	F	S	N	Y	F	F	D	T	T	Q	G	H	S	Q	I	N	G	C	T	V	R	N	V	Y	I	K	E	A	F	D	T	G	V	R	Y	D	F	K	G	N	F	D	L	E	G	L	E	R	G	I	E	E	V
Query Conservation
Alig confidence																										.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.																.
Template Conservation																										.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.																.
Template Sequence	Q	A	I	E	L	C	L	A	V	L	A	N	P	G	Q	N	I	L	I	P	R	P	G	F	S	.	.	.	.	.	.	.	.	.	L	Y	R	T	L	A	E	S	M	G	I	E	V	K	L	Y	N	L	L	P	E	K	.	.	.	.	.	.	.	.	S	W	E	I	D	L	K	Q	L	E	S	L	I	D	E	.
Template Known Secondary structure									T	T			S	S							S	S				.	.	.	.	.	.	.	.	.										T										G	G	G	.	.	.	.	.	.	.	.	T	T									T	T			S	.
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.																.
Template SS confidence
	146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170										.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.									.	.	.	.	.	.	.	200	.	.	.	.	.	.	.

	184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	P	N	N	V	P	Y	I	V	A	T	I	T	S	N	S	A	G	G	Q	P	V	S	L	A	N	L	K	A	M	Y	S	I	A	K	K	Y	D	I	P	V	V	M	D	S	A	R	F	A	E	N	A	Y	F	I	K	Q	R	E	A	E	Y	K	D	W	T	I	E	Q	I	T	R	E	T	Y	K	Y	A	D	M
Query Conservation
Alig confidence	.	.	.															.																																.	.	.	.	.	.	.	.	.	.	.
Template Conservation	.	.	.															.																																.	.	.	.	.	.	.	.	.	.	.
Template Sequence	.	.	.	K	T	A	C	L	V	V	N	N	P	S	N	P	C	.	G	S	V	F	S	K	R	H	L	Q	K	I	L	A	V	A	E	R	Q	C	V	P	I	L	A	D	E	I	Y	G	D	.	.	.	.	.	.	.	.	.	.	.	M	V	F	S	D	C	K	Y	E	P	M	A	T	L	S	T	N	V	P	I
Template Known Secondary structure	.	.	.	S								S	S		T	T	T	.																	T	T	T	T								T	T	T	T	.	.	.	.	.	.	.	.	.	.	.		B		S	S	S					G	G	G	G		S	S
Template Predicted Secondary structure	.	.	.															.																																.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
				208	.	210	.	.	.	.	.	.	.	.	.	220	.		.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.												.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.

	264	.	.	.	.	.	270	.	.	.	.	.	.			.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure														.	.
Query SS confidence														.	.
Query Sequence	L	A	M	S	A	K	K	D	A	M	V	P	M	.	.	G	G	L	L	C	M	K	D	D	S	F	F	D	V	Y	T	E	C	R	T	L	C	V	V	Q	E	G	F	P	T	Y	G	G	L	E	G	G	A	M	E	R	L	A	V	G	L	Y	D	G	M	N	L	D	W	L	A	Y	R	I	A	Q	V	Q	Y	L
Query Conservation														.	.
Alig confidence														.	.
Template Conservation
Template Sequence	L	S	C	G	G	L	A	R	W	L	V	P	G	W	R	L	G	W	I	L	I	H	D	R	R	D	I	F	G	N	E	I	R	D	G	L	V	K	L	S	Q	R	I	L	G	P	C	T	I	V	Q	G	A	L	K	S	I	L	Q	R	T	P	Q	E	F	Y	Q	D	T	L	S	F	L	K	S	N	A	D	L	C
Template Known Secondary structure					B					S		G	G	G										S	S	S	S	S													T	T	T			S
Template Predicted Secondary structure
Template SS confidence
	273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.

	342	.	.	.	.	.	.	.	350	.	.	.			.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.
Query SS confidence													.	.
Query Sequence	V	D	G	L	E	E	I	G	V	V	C	Q	.	.	Q	A	G	G	H	A	A	F	V	D	A	G	K	L	L	P	H	I	P	A	D	Q	F	P	A	Q	A	L	A	C	E	L	Y	K	V	A	G	I	R	A	V	E	I	G	S	F	L	L	G	R	D	P	K	T	G	K	Q	L	P	C	P	A	E	L	L	R
Query Conservation													.	.
Alig confidence													.	.															.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	Y	G	A	L	S	A	I	P	G	L	Q	P	V	R	P	S	G	A	M	Y	L	M	V	G	I	E	M	E	.	.	.	H	F	P	E	F	E	N	D	V	E	F	T	E	R	L	I	A	E	Q	S	V	H	C	L	.	.	.	.	.	.	.	.	.	.	.	.	.	P	A	T	C	F	E	Y	P	N	F	F	R
Template Known Secondary structure							S	T	T	B			B				B	T	T						B		T	T	.	.	.	S			S		S	S																		.	.	.	.	.	.	.	.	.	.	.	.	.		G	G	G	G	T			S
Template Predicted Secondary structure																													.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.				.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.														.	.	.	.	410	.	.	.	.	.	.	.

	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	T	I	P	R	A	T	Y	T	Q	T	H	M	D	F	I	I	E	A	F	K	H	V	K	E	N
Query Conservation
Alig confidence						.	.	.
Template Conservation						.	.	.
Template Sequence	V	V	I	T	V	.	.	.	P	E	V	M	M	L	E	A	C	S	R	I	Q	E	F	C	E	Q
Template Known Secondary structure			S		S	.	.	.																	T	T
Template Predicted Secondary structure						.	.	.
Template SS confidence
	418	.	420	.	.				.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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