Job Description P0A853 Confidence 99.76% Date Thu Jan 5 11:06:55 GMT 2012 Rank 220 Aligned Residues 312 % Identity 14% Template c3p1tB_ PDB info PDB header:transferase Chain: B: PDB Molecule:putative histidinol-phosphate aminotransferase; PDBTitle: crystal structure of a putative aminotransferase (bpsl1724) from2 burkholderia pseudomallei k96243 at 2.60 a resolution Resolution 2.60 Å

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		48	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.			.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.			.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure																							.	.																											.	.
Query SS confidence																							.	.																											.	.
Query Sequence		I	D	L	L	T	D	S	G	T	G	A	V	T	Q	S	M	Q	A	A	M	M	.	.	R	G	D	E	A	Y	S	G	S	R	S	Y	Y	A	L	A	E	S	V	K	N	I	F	G	Y	Q	.	.	Y	T	I	P	T	H	Q	G	R	G	A	E	Q	I	Y	I	P	V	L	I	K	K	R	E	Q	E	K	G	L
Query Conservation																							.	.																											.	.
Alig confidence																							.	.																											.	.																				.	.
Template Conservation																																																																								.	.
Template Sequence		V	C	L	A	F	N	E	N	P	E	A	V	E	P	R	V	Q	A	A	I	A	A	A	A	A	R	I	N	R	Y	P	F	D	A	E	P	R	V	X	R	K	L	A	E	H	F	S	C	P	E	D	N	L	X	L	V	R	G	I	D	E	C	F	D	R	I	S	A	E	F	.	.	S	S	X	R	F	V	T	A
Template Known Secondary structure					S	S					S														G	G	G	T	T	S			T	T													T	T	S		G	G	G					S													S	.	.	T	T	S
Template Predicted Secondary structure																																																																								.	.
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.			.	.	90	.	.	.	.	.
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	S	K	M	V	A	F	S	N	Y	F	F	D	T	T	Q	G	H	S	Q	I	N	G	C	T	V	R	N	V	Y	I	K	E	A	F	D	T	G	V	R	Y	D	F	K	G	N	F	D	L	E	G	L	E	R	G	I	E	E	V	G	P	N	N	V	P	Y	I	V	A	T	I	T	S	N	S	A	G	G	Q
Query Conservation
Alig confidence				.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.
Template Sequence		W	P	.	.	.	.	.	.	.	.	.	G	F	D	G	Y	R	A	R	I	A	V	S	G	L	R	H	F	E	I	G	L	T	D	.	.	.	.	.	.	.	.	.	.	D	L	L	L	D	P	N	D	L	A	Q	V	S	.	.	.	.	.	.	R	D	D	C	V	V	L	A	N	P	S	N	P	T	G	Q	A
Template Known Secondary structure		S	S	.	.	.	.	.	.	.	.	.	S		S										T								B		T	.	.	.	.	.	.	.	.	.	.	T	S	S	B						T	T			.	.	.	.	.	.	T	T							S	S		T	T	T
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.
Template SS confidence
		96	.										.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120											.	.	.	.	.	.	.	.	.	130	.	.	.							.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.			.	.	.	280	.
Predicted Secondary structure																																																																											.	.
Query SS confidence																																																																											.	.
Query Sequence		P	V	S	L	A	N	L	K	A	M	Y	S	I	A	K	K	Y	D	I	P	V	V	M	D	S	A	R	F	A	E	N	A	Y	F	I	K	Q	R	E	A	E	Y	K	D	W	T	I	E	Q	I	T	R	E	T	Y	K	Y	A	D	M	L	A	M	S	A	K	K	D	A	M	V	P	M	.	.	G	G	L	L	C
Query Conservation																																																																											.	.
Alig confidence				.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.												.	.	.																				.	.
Template Conservation				.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.												.	.	.
Template Sequence		L	S	.	.	.	.	.	A	G	E	L	D	Q	L	R	Q	R	A	G	K	L	L	I	D	E	T	Y	V	.	.	.	.	.	.	.	.	.	.	.	.	D	Y	S	S	F	R	A	R	G	L	A	.	.	.	Y	G	E	N	E	L	V	F	R	S	F	S	K	S	Y	G	L	A	G	L	R	L	G	A	L	F
Template Known Secondary structure				.	.	.	.	.												S							T	T	G	.	.	.	.	.	.	.	.	.	.	.	.	G	G	S	S		S	T	T				.	.	.		B	T	T							S	S	S	T	T	S		T	T	T
Template Predicted Secondary structure				.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.												.	.	.
Template SS confidence
		151	.						.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.													.	.	.	.	.	.	180	.	.	.	.				.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	D	D	S	F	F	D	V	Y	T	E	C	R	T	L	C	V	V	Q	E	G	F	P	T	Y	G	G	L	E	G	G	A	M	E	R	L	A	V	G	L	Y	D	G	M	N	L	D	W	L	A	Y	R	I	A	Q	V	Q	Y	L	V	D	G	L	E	E	I	G	V	V	C	Q	Q	A	G	G	H	A	A	F
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.
Template Sequence		G	P	S	E	L	I	A	A	X	K	R	K	.	.	.	.	.	.	.	.	.	.	Q	W	F	C	N	V	G	T	L	D	L	H	A	L	E	A	A	L	D	N	D	R	A	R	E	A	H	I	A	K	T	L	A	Q	R	R	R	V	A	D	A	L	R	G	L	G	Y	R	V	A	S	S	E	A	N	F	V	L
Template Known Secondary structure												T	T	.	.	.	.	.	.	.	.	.	.	S		T	T	S	S													S																										T	T			B				S	S	S
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.
Template SS confidence
		211	.	.	.	.	.	.	.	.	220	.	.											.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
		362	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	A	G	K	L	L	P	H	I	P	A	D	Q	F	P	A	Q	A	L	A	C	E	L	Y	K	V	A	G	I	R	A	V	E	I	G	S	F	L	L	G	R	D	P	K	T	G	K	Q	L	P	C	P	A	E	L	L	R	L	T	I	P	R	A	T	Y	T	Q	T	H	M	D	F	I	I	E	A	F	K	H
Query Conservation
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.
Template Sequence		V	E	.	.	.	.	.	.	.	.	.	.	.	.	N	A	A	G	E	R	T	L	R	F	L	R	E	R	G	I	Q	V	K	.	.	.	.	.	.	.	.	.	.	.	.	.	D	A	G	Q	F	G	L	H	H	H	I	R	I	S	I	G	.	.	.	.	R	E	E	D	N	D	R	L	L	A	A	L	A	E
Template Known Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.		T	T	T										T	T					.	.	.	.	.	.	.	.	.	.	.	.	.		G	G	G	G	T			S								.	.	.	.
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.
Template SS confidence
		281	.													.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.														.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.					.	.	320	.	.	.	.	.	.	.	.	.	330	.
		442	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	K	E	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	S	D	H
Template Known Secondary structure			T	T
Template Predicted Secondary structure
Template SS confidence
		332	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions