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Job DescriptionP0A853
Confidence99.97%DateThu Jan 5 11:06:55 GMT 2012
Rank51Aligned Residues381
% Identity11%Templatec3oksB_
PDB info PDB header:transferaseChain: B: PDB Molecule:4-aminobutyrate transaminase; PDBTitle: crystal structure of 4-aminobutyrate transaminase from mycobacterium2 smegmatis
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   8.10.........20.........30.........40.........50.........60........ .70.........80....
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Query Sequence  PEPFRIRVIEPVKRTTRAYREEAIIKSGMNPFLLDSEDVFIDLLTDSGTGAVTQSMQAAMM. . . RGDEAYSGSRSYYALA
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Template Sequence  TMPVYAVRAGGGIVEDVDGNRLIDLGSGIAVTTVGNSAPKV. . . . . . . . . . . VEAVRSQVGDFTHTCFMVTPYEGYVAVC
Template Known Secondary structure  SSSS
TTTTS
SST
TT
TT
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TTTTS

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   38.40.........50.........60.........70........ .80.........90.........100......
 
   85....90. ........100.........110.........120.........130.........140.........150.........160.
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Query Sequence  ESVKNIF. . . GYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDT
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Template Sequence  EQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSH. . . . . . THKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAP
Template Known Secondary structure  SS

SSSS......


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S
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   107..110.........120.........130.........140. ........150.........160.........170.........180
 
   162...... .170.........180.........190.........200.........210.........220....
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Query Sequence  GVRYDFK. . . . . . . . . . . . . . . . . GNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPV
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Template Sequence  EIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVF
Template Known Secondary structure  S



GGG
T
T
GGG
SSBTTTT
B


TTTT
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   181........190.........200.........210.........220.........230.........240.........250.........260
 
   225....230.........240.........250.........260.........270.........280.........290.........300....
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Query Sequence  VMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGF
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Template Sequence  IAD. . . . . . . . . . . . EVQTGFARTGAMFACEHEGIDPDLIVTAG. IAGGLPLSAVTGRAE. . . . . . . . IMDSPHVSGLGG
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TTTTTTTTSSSSGGGTTT


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   261.. ......270.........280.........290.. .......300....... ..310.........
 
   305....310.........320.........330.........340......... 350.........360.........370.........380.
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Query Sequence  PTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIG. . . VVCQQAGGHAAFVDAGKLLPHIPADQFPAQAL
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Template Sequence  TYGGNPI. . ACAAALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAMELVKAGTTEPDADLTKA
Template Known Secondary structure  SSSS
..TT
TTTTBSTTS

B
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   321...... ..330.........340.........350.........360.........370.........380.........390........
 
   382.......390.........400.........410.........420.........430.........440....
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Query Sequence  ACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKE
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Template Sequence  LCAGAHAAGVI. . . . . . . . . . . . . . . VLSCGTYGNVVRFL. PPLSIGDDLLNEGLDVLEEVLR
Template Known Secondary structure  TT...............

TTS

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TT

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   399400......... 410.........420... ......430.........440.....
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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