Job Description P0A853 Confidence 99.89% Date Thu Jan 5 11:06:55 GMT 2012 Rank 136 Aligned Residues 346 % Identity 14% Template c3nraA_ PDB info PDB header:transferase Chain: A: PDB Molecule:aspartate aminotransferase; PDBTitle: crystal structure of an aspartate aminotransferase (yp_354942.1) from2 rhodobacter sphaeroides 2.4.1 at 2.15 a resolution Resolution 2.15 Å

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		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.		.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.										.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure																																					.																									.	.	.	.	.	.	.	.	.
Query SS confidence																																					.																									.	.	.	.	.	.	.	.	.
Query Sequence		S	G	M	N	P	F	L	L	D	S	E	D	V	F	I	D	L	L	T	D	S	G	T	G	A	V	T	Q	S	M	Q	A	A	M	M	.	R	G	D	E	A	Y	S	G	S	R	S	Y	Y	A	L	A	E	S	V	K	N	I	F	G	.	.	.	.	.	.	.	.	.	Y	Q	Y	T	I	P	T	H	Q	G	R
Query Conservation																																					.																									.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.									.																									.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		H	G	D	V	D	A	H	E	P	T	P	G	A	F	.	.	.	.	.	.	.	.	.	.	.	.	.	D	L	F	S	A	G	V	Q	S	G	G	V	Q	A	Y	T	E	Y	R	G	D	L	G	I	R	D	L	L	A	P	R	L	A	A	F	T	G	A	P	V	D	A	R	D	G	L	I	I	T	P	G	T	Q
Template Known Secondary structure		S			T	T	T	S				T	T			.	.	.	.	.	.	.	.	.	.	.	.	.										T					S			T	T																		T	S				T	T	T	S					S
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		45	.	.	.	.	50	.	.	.	.	.	.	.	.														.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	E	Q	I	Y	I	P	V	L	I	K	K	R	E	Q	E	K	G	L	D	R	S	K	M	V	A	F	S	N	Y	F	F	D	T	T	Q	G	H	S	Q	I	N	G	C	T	V	R	N	V	Y	I	K	E	A	F	D	T	G	V	R	Y	D	F	K	G	N	F	D	L	E	G	L	E	R	G	I	E	E	V
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.	.																								.	.	.	.																						.
Template Conservation																								.	.	.	.	.	.	.	.	.																								.	.	.	.																						.
Template Sequence		G	A	L	F	L	A	V	A	A	T	V	A	R	G	D	K	V	A	I	V	Q	P	.	.	.	.	.	.	.	.	.	D	Y	F	A	N	R	K	L	V	E	F	F	E	G	E	X	V	P	V	Q	L	D	Y	.	.	.	.	V	S	A	D	E	T	R	A	G	L	D	L	T	G	L	E	E	A	F	K	A	.
Template Known Secondary structure										T	T			T	T								S	.	.	.	.	.	.	.	.	.			T									T	T								B			.	.	.	.		S	S			S	S			B											T	.
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.																								.	.	.	.																						.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.										.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.					.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	P	N	N	V	P	Y	I	V	A	T	I	T	S	N	S	A	G	G	Q	P	V	S	L	A	N	L	K	A	M	Y	S	I	A	K	K	Y	D	I	P	V	V	M	D	S	A	R	F	A	E	N	A	Y	F	I	K	Q	R	E	A	E	Y	K	D	W	T	I	E	Q	I	T	R	E	T	Y	K	Y	A	D	M
Query Conservation
Alig confidence		.	.	.															.																																.	.	.	.	.	.	.
Template Conservation		.	.	.															.																																.	.	.	.	.	.	.
Template Sequence		.	.	.	G	A	R	V	F	L	F	S	N	P	N	N	P	A	.	G	V	V	Y	S	A	E	E	I	G	Q	I	A	A	L	A	A	R	Y	G	A	T	V	I	A	D	Q	L	Y	S	R	.	.	.	.	.	.	.	L	R	Y	A	G	A	S	Y	T	H	L	R	A	E	A	A	V	D	A	E	N	V	V	T
Template Known Secondary structure		.	.	.	T								S	S		T	T	T	.																				T								T	T	T	T	.	.	.	.	.	.	.	S	B		T	T						G	G	G		T	T	S		G	G	G
Template Predicted Secondary structure		.	.	.															.																																.	.	.	.	.	.	.
Template SS confidence
					178	.	180	.	.	.	.	.	.	.	.	.	190	.		.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.								.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.			.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure																																																																		.	.
Query SS confidence																																																																		.	.
Query Sequence		L	A	M	S	A	K	K	D	A	M	V	P	M	G	G	L	L	C	M	K	D	D	S	F	F	D	V	Y	T	E	C	R	T	L	C	V	V	Q	E	G	F	P	T	Y	G	G	L	E	G	G	A	M	E	R	L	A	V	G	L	Y	D	G	M	N	.	.	L	D	W	L	A	Y	R	I	A	Q	V	Q	Y	L
Query Conservation																																																																		.	.
Alig confidence																																			.	.	.	.	.	.	.	.	.																							.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.
Template Sequence		I	X	G	P	S	T	E	S	L	S	G	Y	R	L	G	V	A	F	G	S	R	A	I	I	A	R	X	E	K	L	Q	A	I	.	.	.	.	.	.	.	.	.	V	S	L	R	A	A	G	Y	S	Q	A	V	L	R	G	W	F	D	E	A	P	G	W	X	E	D	R	I	A	R	H	Q	A	I	R	D	E	L
Template Known Secondary structure											G	G	G																						.	.	.	.	.	.	.	.	.		T	S	S	S						G	G	G	G	G	T	T				T	T
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.										280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		342	.	.	.	.	.	.	.	350	.	.	.	.	.		.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Predicted Secondary structure																.
Query SS confidence																.
Query Sequence		V	D	G	L	E	E	I	G	V	V	C	Q	Q	A	.	G	G	H	A	A	F	V	D	A	G	K	L	L	P	H	I	P	A	D	Q	F	P	A	Q	A	L	A	C	E	L	Y	K	V	A	G	I	R	A	V	E	I	G	S	F	L	L	G	R	D	P	K	T	G	K	Q	L	P	C	P	A	E	L	L	R	L
Query Conservation																.
Alig confidence																.									.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	H	V	L	R	G	E	G	V	F	A	R	T	P	Q	A	G	S	Y	L	F	P	R	.	.	.	.	.	.	.	L	P	K	L	A	V	A	P	A	E	F	V	K	I	L	R	L	Q	A	G	V	V	V	T	P	G	T	E	F	S	P	H	T	A	.	.	.	.	.	.	.	.	.	.	.	D	S	V	R	L
Template Known Secondary structure											B					S	B	S	S					B	.	.	.	.	.	.	.				B	S	S																				G	G	G	T		T	T		T	.	.	.	.	.	.	.	.	.	.	.	T	B
Template Predicted Secondary structure																									.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.								.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.												.	.	.	.	380
		421	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	I	P	R	A	T	Y	T	Q	T	H	M	D	F	I	I	E	A	F	K	H	V	K	E	N	A	A
Query Conservation
Alig confidence						.	.	.
Template Conservation						.	.	.
Template Sequence		N	F	S	Q	.	.	.	D	H	E	A	A	V	A	A	A	R	R	I	V	T	L	V	E	R	Y	R
Template Known Secondary structure					S	.	.	.																				B
Template Predicted Secondary structure						.	.	.
Template SS confidence
		382	.	.	.				.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions