Job Description P0A853 Confidence 100.00% Date Thu Jan 5 11:06:55 GMT 2012 Rank 15 Aligned Residues 318 % Identity 17% Template c3n0lA_ PDB info PDB header:transferase Chain: A: PDB Molecule:serine hydroxymethyltransferase; PDBTitle: crystal structure of serine hydroxymethyltransferase from2 campylobacter jejuni Resolution 1.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		57	.	.	60	.	.	.	.	.	.	.	.												.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.					.	.	.	90	.	.	.	.	.	.		.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.											.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.											.
Query Sequence		G	A	V	T	Q	S	M	Q	A	A	M	M	.	.	.	.	.	.	.	.	.	.	.	R	G	D	E	A	Y	S	G	S	R	S	Y	Y	A	L	A	E	S	.	.	.	.	V	K	N	I	F	G	Y	Q	Y	T	.	I	P	T	H	Q	G	R	G	A	E	Q	I	Y	I	P	V	L	I	K	K	R	E	Q	E
Query Conservation														.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.											.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.											.
Template Conservation
Template Sequence		N	F	T	L	P	E	V	X	E	V	X	G	S	I	L	T	N	K	Y	A	E	G	Y	P	G	K	R	Y	Y	G	G	C	E	F	V	D	E	I	E	T	L	A	I	E	R	C	K	K	L	F	N	C	K	F	A	N	V	Q	P	N	S	G	S	Q	A	N	Q	G	V	Y	A	A	L	I	N	P	G	D	K	I
Template Known Secondary structure													T	S	G	G	G	G							T	T			S	S	S																					T		S							S	S													S		T	T
Template Predicted Secondary structure
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure
Query SS confidence
Query Sequence		K	G	L	D	R	S	K	M	V	A	F	S	N	Y	F	F	D	T	T	Q	G	H	S	Q	I	N	G	C	T	V	R	N	V	Y	I	K	E	A	F	D	T	G	V	R	Y	D	F	K	G	N	F	D	L	E	G	L	E	R	G	I	E	E	V	G	P	N	N	V	P	Y	I	V	A	T	I	T	S	N	S	A
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.																				.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.																				.	.	.
Template Sequence		L	G	X	D	L	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	X	Y	E	S	C	F	Y	G	V	E	L	.	.	.	.	.	.	.	.	.	.	D	G	R	I	D	Y	E	K	V	R	E	I	A	K	K	E	K	P	K	.	.	.	L	I	V	C	G	A	S	A	Y	A	R
Template Known Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S									T	.	.	.	.	.	.	.	.	.	.	T	S	S																S	.	.	.							S	S			S
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.																				.	.	.
Template SS confidence
		112	.	.	.	.	.																					.	.	120	.	.	.	.	.	.	.	.											.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.				.	.	150	.	.	.	.	.	.	.	.
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	Q	P	V	S	L	A	N	L	K	A	M	Y	S	I	A	K	K	Y	D	I	P	V	V	M	D	S	A	R	F	A	E	N	A	Y	F	I	K	Q	R	E	A	E	Y	K	D	W	T	I	E	Q	I	T	R	E	T	Y	K	Y	A	D	M	L	A	M	S	A	K	K	D	A	M	V	P	M	G	G	L	L
Query Conservation
Alig confidence				.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	I	.	.	.	.	.	.	D	F	A	K	F	R	E	I	A	D	E	I	G	A	Y	L	F	A	D	I	A	H	I	A	G	L	V	V	A	G	E	H	P	S	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	P	Y	A	H	V	V	S	S	T	T	H	K	T	L	R	G	P	R	G	G	I	I
Template Known Secondary structure				.	.	.	.	.	.													T								T	T	T						T	T	S	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T		S						S	S	T	T	T		S		S
Template Predicted Secondary structure				.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		175	.							.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.															.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.				.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
Predicted Secondary structure																																																		.	.	.
Query SS confidence																																																		.	.	.
Query Sequence		C	M	K	D	D	S	F	F	D	V	Y	T	E	C	R	T	L	C	V	V	Q	E	G	F	P	T	Y	G	G	L	E	G	G	A	M	E	R	L	A	V	G	L	Y	D	G	M	N	L	.	.	.	D	W	L	A	Y	R	I	A	Q	V	Q	Y	L	V	D	G	L	E	E	I	G	V	V	C	Q	Q	A	G	G
Query Conservation																																																		.	.	.
Alig confidence																				.	.	.	.	.	.	.																								.	.	.
Template Conservation																				.	.	.	.	.	.	.
Template Sequence		X	T	N	D	E	E	L	A	K	K	I	N	S	A	I	F	P	G	.	.	.	.	.	.	.	I	Q	G	G	P	L	X	H	V	I	A	A	K	A	V	G	F	K	F	N	L	S	D	E	W	K	V	Y	A	K	Q	V	R	T	N	A	Q	V	L	A	N	V	L	X	D	R	K	F	K	L	V	S	D	G	T
Template Known Secondary structure				S													T	T	T	.	.	.	.	.	.	.	T		S	S																	T	S																								T	T				G	G	G	S
Template Predicted Secondary structure																				.	.	.	.	.	.	.
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.								.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
				358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.		.	.	.	.	.	.	420	.	.	.				.	.	.	.	.	.	430	.
Predicted Secondary structure		.	.																																																									.											.	.	.
Query SS confidence		.	.																																																									.											.	.	.
Query Sequence		.	.	H	A	A	F	V	D	A	G	K	L	L	P	H	I	P	A	D	Q	F	P	A	Q	A	L	A	C	E	L	Y	K	V	A	G	I	R	A	V	E	I	G	S	F	L	L	G	R	D	P	K	T	G	K	Q	L	P	C	.	P	A	E	L	L	R	L	T	I	P	.	.	.	R	A	T	Y	T	Q	T	H
Query Conservation		.	.																																																									.											.	.	.
Alig confidence		.	.							.	.	.	.	.	.	.																.							.	.	.	.	.	.	.	.														.											.	.	.
Template Conservation										.	.	.	.	.	.	.																.							.	.	.	.	.	.	.	.
Template Sequence		D	N	H	L	V	L	X	S	.	.	.	.	.	.	.	F	L	D	R	E	F	S	G	K	D	A	D	L	A	L	.	G	N	A	G	I	T	.	.	.	.	.	.	.	.	A	N	K	N	T	V	P	G	E	I	R	S	P	F	I	T	S	G	L	R	L	G	T	P	A	L	T	A	R	G	F	K	E	K	E
Template Known Secondary structure		S	S	S						.	.	.	.	.	.	.		T	T	S	S	S										.			T	T			.	.	.	.	.	.	.	.							T	T			S		T	T	T		S												T	T
Template Predicted Secondary structure										.	.	.	.	.	.	.																.							.	.	.	.	.	.	.	.
Template SS confidence
		308	.	310	.	.	.	.	.								.	.	.	.	320	.	.	.	.	.	.	.	.	.	330		.	.	.	.	.	.									.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
		432	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450
Predicted Secondary structure
Query SS confidence
Query Sequence		M	D	F	I	I	E	A	F	K	H	V	K	E	N	A	A	N	I	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		X	E	I	V	S	N	Y	I	A	D	I	L	D	D	V	N	N	E	K
Template Known Secondary structure															T	T	T
Template Predicted Secondary structure
Template SS confidence
		372	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions