Job Description P0A853 Confidence 99.95% Date Thu Jan 5 11:06:55 GMT 2012 Rank 64 Aligned Residues 331 % Identity 12% Template c3lwsF_ PDB info PDB header:lyase Chain: F: PDB Molecule:aromatic amino acid beta-eliminating PDBTitle: crystal structure of putative aromatic amino acid beta-2 eliminating lyase/threonine aldolase. (yp_001813866.1) from3 exiguobacterium sp. 255-15 at 2.00 a resolution Resolution 2.00 Å

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		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.						70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure																																			.	.	.	.	.
Query SS confidence																																			.	.	.	.	.
Query Sequence		N	P	F	L	L	D	S	E	D	V	F	I	D	L	L	T	D	S	G	T	G	A	V	T	Q	S	M	Q	A	A	M	M	R	.	.	.	.	.	G	D	E	A	Y	S	G	S	R	S	Y	Y	A	L	A	E	S	V	K	N	I	F	G	Y	Q	Y	T	I	P	T	H	Q	G	R	G	A	E	Q	I	Y	I	P
Query Conservation																																			.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	T	G	Q	I	S	G	H	G	K	R	N	.	.	.	.	.	.	.	.	.	.	.	V	G	V	L	K	T	A	F	A	A	V	A	D	E	X	A	S	D	Q	Y	G	T	G	A	I	I	E	P	F	E	Q	K	F	A	D	V	L	G	X	D	D	A	V	F	F	P	S	G	T	X	A	Q	Q	V	A	L	R
Template Known Secondary structure			S			S	S	B	S	S				.	.	.	.	.	.	.	.	.	.	.									T	T	S		T	T						T	T			T	T												T	T		S						S
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.												.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		112	.	.	.		.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		V	L	I	K	.	K	R	E	Q	E	K	G	L	D	R	S	K	M	V	A	F	S	N	Y	F	F	D	T	T	Q	G	H	S	Q	I	N	G	C	T	V	R	N	V	Y	I	K	E	A	F	D	T	G	V	R	Y	D	F	K	G	N	F	D	L	E	G	L	E	R	G	I	E	E	V	G	P	N	N	V	P	Y
Query Conservation						.
Alig confidence						.												.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.
Template Conservation																		.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.
Template Sequence		I	W	S	D	E	T	D	N	R	T	V	A	Y	H	P	L	.	.	.	.	.	C	H	L	E	I	H	E	Q	D	G	L	K	E	L	H	P	I	E	T	I	L	V	G	A	A	D	.	.	.	.	.	.	.	.	.	.	.	R	L	X	T	L	D	E	I	K	A	L	P	.	.	.	.	.	.	D	I	A	C
Template Known Secondary structure								T								T	T	.	.	.	.	.						S	S	T	T						S	S							S		T	T	.	.	.	.	.	.	.	.	.	.	.	S												.	.	.	.	.	.	S		S
Template Predicted Secondary structure																		.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.						.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.												.	.	.	.	.	.	.	.	130	.	.	.							.	.	.	.
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	A	T	I	T	S	N	S	A	G	G	Q	P	V	S	L	A	N	L	K	A	M	Y	S	I	A	K	K	Y	D	I	P	V	V	M	D	S	A	R	F	A	E	N	A	Y	F	I	K	Q	R	E	A	E	Y	K	D	W	T	I	E	Q	I	T	R	E	T	Y	K	Y	A	D	M	L	A	M	S	A	K	K
Query Conservation
Alig confidence																																																.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	L	L	E	L	P	Q	R	E	I	G	G	V	A	P	A	F	S	E	L	E	T	I	S	R	Y	C	R	E	R	G	I	R	L	H	L	D	G	A	R	L	F	E	X	L	P	.	.	.	.	.	.	.	.	.	.	.	.	Y	Y	E	K	T	A	A	E	I	A	G	L	F	D	S	I	Y	I	S	F	Y	G
Template Known Secondary structure						S	S	B	G	G	G	T	S	B																		T								T	T							.	.	.	.	.	.	.	.	.	.	.	.			T								T	T		S
Template Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.													.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		D	A	M	V	P	M	G	G	L	L	C	M	K	D	D	S	F	F	D	V	Y	T	E	C	R	T	L	C	V	V	Q	E	G	F	P	T	Y	G	G	L	E	G	G	A	M	E	R	L	A	V	G	L	Y	D	G	M	N	L	D	W	L	A	Y	R	I	A	Q	V	Q	Y	L	V	D	G	L	E	E	I	.	.
Query Conservation																																																																																.	.
Alig confidence						.																						.	.	.	.	.	.	.	.	.																																												.	.
Template Conservation						.																						.	.	.	.	.	.	.	.	.
Template Sequence		L	G	G	I	.	A	G	A	I	L	A	G	P	A	A	F	C	Q	T	A	R	I	W	K	R	R	.	.	.	.	.	.	.	.	.	Y	G	G	D	L	I	S	L	Y	P	Y	I	V	S	A	D	Y	Y	Y	E	L	R	K	D	R	X	G	Q	Y	Y	E	Q	A	K	Q	L	A	E	Q	F	N	A	L	P	G
Template Known Secondary structure					S	.	S																					.	.	.	.	.	.	.	.	.		T				S																	T	T																			S	T	T
Template Predicted Secondary structure						.																						.	.	.	.	.	.	.	.	.
Template SS confidence
		207	.	.	210		.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.										.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
			349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.			.	.
Predicted Secondary structure		.																																																																												.	.
Query SS confidence		.																																																																												.	.
Query Sequence		.	G	V	V	C	Q	Q	A	G	G	H	A	A	F	V	D	A	G	K	L	L	P	H	I	P	A	D	Q	F	P	A	Q	A	L	A	C	E	L	Y	K	V	A	G	I	R	A	V	E	I	G	S	F	L	L	G	R	D	P	K	T	G	K	Q	L	P	C	P	A	E	L	L	R	L	T	I	P	.	.	R	A
Query Conservation		.																																																																												.	.
Alig confidence		.																.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Template Conservation																		.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	H	T	T	P	E	V	P	V	S	N	X	F	H	L	H	.	.	.	.	.	.	.	F	D	G	Q	A	A	D	I	S	P	K	L	E	Q	V	Q	E	E	T	G	L	G	.	.	.	.	.	.	.	.	.	.	.	.	F	V	G	Y	L	V	D	K	D	G	Y	C	S	T	E	I	S	V	G	D	A	Y	G
Template Known Secondary structure						S	S	S		S	S	S						.	.	.	.	.	.	.			S																				.	.	.	.	.	.	.	.	.	.	.	.	S		S						S	S								B
Template Predicted Secondary structure																		.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.								.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.													.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
		426	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Y	T	Q	T	H	M	D	F	I	I	E	A	F	K	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	L	D	Q	Q	T	R	D	A	G	F	A	R	L	R	Q
Template Known Secondary structure		T	S
Template Predicted Secondary structure
Template SS confidence
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions