Job Description P0A853 Confidence 99.80% Date Thu Jan 5 11:06:55 GMT 2012 Rank 208 Aligned Residues 315 % Identity 15% Template c3k7yA_ PDB info PDB header:transferase Chain: A: PDB Molecule:aspartate aminotransferase; PDBTitle: aspartate aminotransferase of plasmodium falciparum Resolution 2.80 Å

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		61	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.											.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.		.	.	120	.	.	.	.	.	.	.	.
Predicted Secondary structure															.																			.	.	.	.	.	.	.	.	.	.																											.
Query SS confidence															.																			.	.	.	.	.	.	.	.	.	.																											.
Query Sequence		Q	S	M	Q	A	A	M	M	R	G	D	E	A	.	Y	S	G	S	R	S	Y	Y	A	L	A	E	S	V	K	N	I	F	.	.	.	.	.	.	.	.	.	.	G	Y	Q	Y	T	I	P	T	H	Q	G	R	G	A	E	Q	I	Y	I	P	V	L	I	K	K	R	.	E	Q	E	K	G	L	D	R	S	K	M
Query Conservation															.																			.	.	.	.	.	.	.	.	.	.																											.
Alig confidence															.																			.	.	.	.	.	.	.	.	.	.																											.									.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		N	A	D	K	L	V	T	E	N	Y	K	E	K	P	Y	L	L	G	N	G	T	E	D	F	S	T	L	T	Q	N	L	I	F	G	N	N	S	K	Y	I	E	D	K	K	I	C	T	I	Q	C	I	G	G	T	G	A	I	F	V	L	L	E	F	L	K	M	L	N	V	E	T	L	Y	V	T	N	P	.	.	.
Template Known Secondary structure																		T	T	S	S															S	S		T	T	T	T	T	T																							T	T	T								S	S	.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	F	S	N	Y	F	F	D	T	T	Q	G	H	S	Q	I	N	G	C	T	V	R	N	V	Y	I	K	E	A	F	D	T	G	V	R	Y	D	F	K	G	N	F	D	L	E	G	L	E	R	G	I	E	E	V	G	P	N	N	V	P	Y	I	V	A	T	I	T	S	N	S	A	G	G	Q	P	V	S	L	A
Query Conservation
Alig confidence		.	.	.	.	.	.																								.	.	.	.	.	.	.	.																				.																.
Template Conservation		.	.	.	.	.	.																								.	.	.	.	.	.	.	.																				.																.
Template Sequence		.	.	.	.	.	.	P	Y	I	N	H	V	N	M	I	E	S	R	G	F	N	L	K	Y	I	N	F	F	D	.	.	.	.	.	.	.	.	Y	N	L	I	D	I	N	Y	D	L	F	L	N	D	L	R	N	I	P	.	N	G	S	S	V	I	L	Q	I	S	C	Y	N	P	C	.	S	V	N	I	E	E	K
Template Known Secondary structure		.	.	.	.	.	.											T	T	T											.	.	.	.	.	.	.	.	T	T	T	T														S		.	S	S								S	S		T	T	T	.
Template Predicted Secondary structure		.	.	.	.	.	.																								.	.	.	.	.	.	.	.																				.																.
Template SS confidence
								131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.									.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.		.	.	.	.	.	.	.	180	.	.	.	.	.	.	.		.	.	190	.	.	.	.
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.						.	.	.	.	.	.	.	270	.	.	.	.	.	.			.	.	.	280	.
Predicted Secondary structure																																																								.	.	.	.	.															.	.
Query SS confidence																																																								.	.	.	.	.															.	.
Query Sequence		N	L	K	A	M	Y	S	I	A	K	K	Y	D	I	P	V	V	M	D	S	A	R	F	A	E	N	A	Y	F	I	K	Q	R	E	A	E	Y	K	D	W	T	I	E	Q	I	T	R	E	T	Y	K	Y	A	D	.	.	.	.	.	M	L	A	M	S	A	K	K	D	A	M	V	P	M	.	.	G	G	L	L	C
Query Conservation																																																								.	.	.	.	.															.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.															.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	F	D	E	I	I	E	I	V	L	H	K	K	H	V	I	I	F	D	I	A	Y	Q	.	.	.	.	.	.	.	.	.	.	.	.	G	F	G	H	T	N	L	E	E	D	V	L	L	I	R	K	F	E	E	K	N	I	A	F	S	V	C	Q	S	F	S	K	N	M	S	L	Y	G	E	R	A	G	A	L	H
Template Known Secondary structure																						S		T	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S	S	S	S	T	T	G	G	G								T	T	T										T	T	T	S			T	T	T	T
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.													.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.									.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure																																												.	.	.	.	.	.	.	.																													.	.
Query SS confidence																																												.	.	.	.	.	.	.	.																													.	.
Query Sequence		M	K	D	D	S	F	F	D	V	Y	T	E	C	R	T	L	C	V	V	Q	E	G	F	P	T	Y	G	G	L	E	G	G	A	M	E	R	L	A	V	G	L	Y	.	.	.	.	.	.	.	.	D	G	M	N	L	D	W	L	A	Y	R	I	A	Q	V	Q	Y	L	V	D	G	L	E	E	I	G	V	V	.	.
Query Conservation																																												.	.	.	.	.	.	.	.																													.	.
Alig confidence																								.	.																			.	.	.	.	.	.	.	.																													.	.
Template Conservation																								.	.
Template Sequence		I	V	C	K	N	Q	E	E	K	K	I	V	F	N	N	L	C	F	I	V	R	K	.	.	F	Y	S	S	P	V	I	H	T	N	R	I	L	C	Q	L	L	N	N	Q	N	L	K	L	N	W	I	K	E	L	S	Q	L	S	Q	R	I	T	N	N	R	I	L	F	F	N	K	L	E	T	Y	Q	K	K	Y	N
Template Known Secondary structure					S	S																	T	.	.	T	T	S	S																																																G	G	G	G	T
Template Predicted Secondary structure																								.	.
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.			.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
									352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	C	Q	Q	A	G	G	H	A	A	F	V	D	A	G	K	L	L	P	H	I	P	A	D	Q	F	P	A	Q	A	L	A	C	E	L	Y	K	V	A	G	I	R	A	V	E	I	G	S	F	L	L	G	R	D	P	K	T	G	K	Q	L	P	C	P	A	E	L	L	R	L	T	I	P	R
Query Conservation		.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.
Template Sequence		L	N	Y	D	W	N	V	Y	K	K	Q	R	G	L	F	S	F	V	P	L	L	A	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	A	E	H	L	K	T	H	H	I	Y	I	I	N	N	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	I	N	V	.	.
Template Known Secondary structure						G	G	G	G	S	S			S	S					G	G	G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T	T	T	T	T	T	T	T					T	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				G	.	.
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.
Template SS confidence
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.															.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.																						380	.	.	.
		425	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	Y	T	Q	T	H	M	D	F	I	I	E	A	F	K	H	V	K	E	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	G	I	T	K	N	N	V	D	Y	I	A	D	K	I	C	L	S	L	S	Q
Template Known Secondary structure		G	G			T	T
Template Predicted Secondary structure
Template SS confidence
		384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions