Job Description P0A853 Confidence 99.90% Date Thu Jan 5 11:06:55 GMT 2012 Rank 114 Aligned Residues 352 % Identity 14% Template c3ju7B_ PDB info PDB header:transferase Chain: B: PDB Molecule:putative plp-dependent aminotransferase; PDBTitle: crystal structure of putative plp-dependent aminotransferase2 (np_978343.1) from bacillus cereus atcc 10987 at 2.19 a resolution Resolution 2.19 Å

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		48	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.		.	.	.	80	.	.	.	.	.	.	.	.	.	90	.			.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure																															.																.	.																							.
Query SS confidence																															.																.	.																							.
Query Sequence		I	D	L	L	T	D	S	G	T	G	A	V	T	Q	S	M	Q	A	A	M	M	R	G	D	E	A	Y	S	G	.	S	R	S	Y	Y	A	L	A	E	S	V	K	N	I	F	.	.	G	Y	Q	Y	T	I	P	T	H	Q	G	R	G	A	E	Q	I	Y	I	P	V	L	.	I	K	K	R	E	Q	E	K	G	L
Query Conservation																															.																.	.																							.
Alig confidence																															.																.	.																							.
Template Conservation
Template Sequence		I	P	F	L	R	A	S	T	V	P	V	I	E	Y	L	D	E	L	K	E	I	D	A	S	H	I	Y	T	N	Y	G	P	I	N	Q	R	F	E	Q	T	I	X	S	G	F	F	Q	N	R	G	A	V	T	T	V	A	N	A	T	L	G	L	X	A	A	I	Q	L	K	K	R	K	K	G	K	Y	A	L	X	P
Template Known Secondary structure		B		S								G	G	G	T											T			S	S	S															T	S	T	T		S						S														S		T	T
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	S	K	M	V	A	F	S	N	Y	F	F	D	T	T	Q	G	H	S	Q	I	N	G	C	T	V	R	N	V	Y	I	K	E	A	F	D	T	G	V	R	Y	D	F	K	G	N	F	D	L	E	G	L	E	R	G	I	E	E	V	G	P	N	N	V	P	Y	I	V	A	T	I	T	S	N	S	A	G	G	Q
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.																.	.	.	.																.	.
Template Conservation							.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.																.	.	.	.																.	.
Template Sequence		S	F	T	F	P	.	.	.	.	.	.	.	.	.	A	T	P	L	A	A	I	W	C	G	L	E	P	Y	F	I	D	I	S	I	D	.	.	.	.	.	.	.	.	.	D	W	Y	X	D	K	T	V	L	W	D	K	I	E	E	.	.	.	.	L	K	E	E	V	A	I	V	V	P	Y	A	T	F	G	.	.
Template Known Secondary structure		S	S	S		T	.	.	.	.	.	.	.	.	.									T	T								B		T	T	.	.	.	.	.	.	.	.	.	T		S	B												.	.	.	.		G	G	G							B		T	T	T	.	.
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.																.	.	.	.																.	.
Template SS confidence
		84	.	.	.	.										.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.										110	.	.	.	.	.	.	.	.	.	120	.	.	.	.					.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	S	L	A	N	L	K	A	M	Y	S	I	A	K	K	Y	D	I	P	V	V	M	D	S	A	R	F	A	E	N	A	Y	F	I	K	Q	R	E	A	E	Y	K	D	W	T	I	E	Q	I	T	R	E	T	Y	K	Y	A	D	M	L	A	M	S	A	K	K	D	A	M	V	P	M	G	G	L	L	C	M	K
Query Conservation
Alig confidence		.	.														.																												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.														.																												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	S	W	X	N	L	E	E	Y	E	E	L	E	K	.	K	G	V	P	V	V	V	D	A	A	P	G	F	G	L	X	N	G	G	X	H	Y	G	Q	D	F	S	.	.	.	.	.	.	.	.	.	.	.	.	.	G	X	I	I	Y	S	F	H	A	T	P	F	G	I	G	E	G	G	L	I	Y	S	K	N
Template Known Secondary structure		.	.	B													.		T			B					T	T		T	T				T	T			T	T	T	T		S	.	.	.	.	.	.	.	.	.	.	.	.	.	S							B							B	S							S
Template Predicted Secondary structure		.	.														.																												.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
				140	.	.	.	.	.	.	.	.	.	150	.	.		.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.														180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.		.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
Predicted Secondary structure																																														.
Query SS confidence																																														.
Query Sequence		D	D	S	F	F	D	V	Y	T	E	C	R	T	L	C	V	V	Q	E	G	F	P	T	Y	G	G	L	E	G	G	A	M	E	R	L	A	V	G	L	Y	D	G	M	N	.	L	D	W	L	A	Y	R	I	A	Q	V	Q	Y	L	V	D	G	L	E	E	I	G	V	V	C	Q	Q	A	G	G	H	A	A	F	V
Query Conservation																																														.
Alig confidence																																														.
Template Conservation
Template Sequence		E	E	D	I	Q	R	I	K	R	X	G	N	F	G	F	D	T	N	R	E	C	T	X	X	G	F	N	C	K	X	S	E	Y	A	A	A	I	G	I	A	T	X	K	K	W	D	D	K	L	K	E	R	T	R	I	S	E	W	Y	K	Q	L	L	Q	S	N	G	L	X	K	K	G	W	Q	L	Q	K	T	E	A
Template Known Secondary structure												T	B	T	T	B		T	T	S		B		S				B																																							T	T	T	T	T	T	T		B					S
Template Predicted Secondary structure
Template SS confidence
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.									.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.	.
Query Sequence		D	A	G	K	L	L	P	H	I	P	A	D	Q	F	P	A	Q	A	L	A	C	E	L	Y	K	V	A	G	I	R	A	V	E	I	G	S	F	L	L	G	R	D	P	K	T	G	K	Q	L	P	C	.	.	.	.	.	.	.	.	P	A	E	L	L	R	L	T	I	P	R	A	T	Y	T	Q	T	H	M	D	F
Query Conservation																																																					.	.	.	.	.	.	.	.
Alig confidence																									.																												.	.	.	.	.	.	.	.										.
Template Conservation																									.																																													.
Template Sequence		V	I	Q	Q	F	X	P	I	L	C	P	E	E	V	R	N	K	Q	V	I	E	D	L	.	K	K	Q	K	I	E	A	R	L	Y	F	S	P	S	C	H	Q	Q	V	L	F	R	N	Y	K	S	T	D	L	T	R	T	N	K	I	A	K	R	I	V	S	L	P	L	.	W	E	G	X	T	K	E	I	V	E	Q
Template Known Secondary structure		B			S	S							T	T	S										.			T	T	B			B		T	T	S	S		G	G	G	S	G	G	G	T	T	S		B	S																		.		T	T
Template Predicted Secondary structure																									.																																													.
Template SS confidence
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.		.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.		.	.	.	.	.	.	.	.	360	.	.
		435	.	.	.	.	440	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	I	E	A	F	K	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	V	I	C	L	G	Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		363	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions