Job Description P0A853 Confidence 99.90% Date Thu Jan 5 11:06:55 GMT 2012 Rank 113 Aligned Residues 347 % Identity 12% Template c3jtxB_ PDB info PDB header:transferase Chain: B: PDB Molecule:aminotransferase; PDBTitle: crystal structure of aminotransferase (np_283882.1) from neisseria2 meningitidis z2491 at 1.91 a resolution Resolution 1.91 Å

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		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.				.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.											.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.																										.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.																										.	.	.	.	.	.	.	.	.	.
Query Sequence		D	S	E	D	V	F	I	D	L	L	T	D	S	G	T	G	A	V	T	Q	S	M	Q	A	A	M	M	.	.	.	R	G	D	E	A	Y	S	G	S	R	S	Y	Y	A	L	A	E	S	V	K	N	I	F	G	Y	.	.	.	.	.	.	.	.	.	.	Q	Y	T	I	P	T	H	Q	G	R	G	A	E	Q	I
Query Conservation																													.	.	.																										.	.	.	.	.	.	.	.	.	.
Alig confidence																													.	.	.																										.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	E	G	X	E	A	V	P	L	H	I	G	E	P	K	H	P	T	P	K	V	I	T	D	A	L	T	A	S	L	H	E	L	E	K	Y	P	L	T	A	G	L	P	E	L	R	Q	A	C	A	N	W	L	K	R	R	Y	D	G	L	T	V	D	A	D	N	E	I	L	P	V	L	G	S	R	E	A	L	F	S
Template Known Secondary structure			T	T						T	T			S			S													T	G	G	G	G	G	S				T	T																	T	T	T					T	T	T	S					S	S
Template Predicted Secondary structure
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
		109	110	.	.	.	.	.				.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure									.	.	.
Query SS confidence									.	.	.
Query Sequence		Y	I	P	V	L	I	K	.	.	.	K	R	E	Q	E	K	G	L	D	R	S	K	M	V	A	F	S	N	Y	F	F	D	T	T	Q	G	H	S	Q	I	N	G	C	T	V	R	N	V	Y	I	K	E	A	F	D	T	G	V	R	Y	D	F	K	G	N	F	D	L	E	G	L	E	R	G	I	E	E	V	G	P
Query Conservation									.	.	.
Alig confidence									.	.	.											.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.																.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.																.	.	.
Template Sequence		F	V	Q	T	V	L	N	P	V	G	I	K	P	A	I	V	S	P	N	P	.	.	.	.	.	.	.	.	.	F	Y	Q	I	Y	E	G	A	T	L	L	G	G	G	E	I	H	F	A	N	C	P	A	P	.	.	.	.	.	.	.	.	.	S	F	N	P	D	W	R	S	I	S	E	E	V	W	K	.	.	.
Template Known Secondary structure																					S	.	.	.	.	.	.	.	.	.												T	T										T	T	.	.	.	.	.	.	.	.	.	T					G	G	G	S						T	.	.	.
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.																.	.	.
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.										.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.										150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.		.	.
Predicted Secondary structure																																																																															.
Query SS confidence																																																																															.
Query Sequence		N	N	V	P	Y	I	V	A	T	I	T	S	N	S	A	G	G	Q	P	V	S	L	A	N	L	K	A	M	Y	S	I	A	K	K	Y	D	I	P	V	V	M	D	S	A	R	F	A	E	N	A	Y	F	I	K	Q	R	E	A	E	Y	K	D	W	T	I	E	Q	I	T	R	E	T	Y	K	Y	A	D	.	M	L
Query Conservation																																																																															.
Alig confidence		.															.																																.	.	.	.	.	.	.																								.
Template Conservation		.															.																																.	.	.	.	.	.	.
Template Sequence		.	R	T	K	L	V	F	V	C	S	P	N	N	P	S	.	G	S	V	L	D	L	D	G	W	K	E	V	F	D	L	Q	D	K	Y	G	F	I	I	A	S	D	E	C	Y	S	E	.	.	.	.	.	.	.	I	Y	F	D	G	N	K	P	L	G	C	L	Q	A	A	A	Q	L	G	R	S	R	Q	K	L	L
Template Known Secondary structure		.	T								S	S		T	T	T	.																												T	T	T	T	.	.	.	.	.	.	.			S	T	T													T	T				T	T
Template Predicted Secondary structure		.															.																																.	.	.	.	.	.	.
Template SS confidence
			167	.	.	170	.	.	.	.	.	.	.	.	.	180		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.								.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		265	.	.	.	.	270	.	.	.	.	.	.			.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.		.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure														.	.																																																				.
Query SS confidence														.	.																																																				.
Query Sequence		A	M	S	A	K	K	D	A	M	V	P	M	.	.	G	G	L	L	C	M	K	D	D	S	F	F	D	V	Y	T	E	C	R	T	L	C	V	V	Q	E	G	F	P	T	Y	G	G	L	E	G	G	A	M	E	R	L	A	V	G	L	Y	D	G	M	N	.	L	D	W	L	A	Y	R	I	A	Q	V	Q	Y	L
Query Conservation														.	.																																																				.
Alig confidence														.	.																					.	.	.	.	.	.	.	.	.																							.
Template Conservation																																				.	.	.	.	.	.	.	.	.
Template Sequence		X	F	T	S	L	S	R	S	N	V	P	G	L	R	S	G	F	V	A	G	D	A	E	L	L	K	N	F	L	L	Y	R	T	Y	.	.	.	.	.	.	.	.	.	H	G	S	A	X	S	I	P	V	Q	R	A	S	I	A	A	W	D	D	E	Q	H	V	I	D	N	R	R	L	Y	Q	E	K	F	E	R	V
Template Known Secondary structure										S		G	G	G																						.	.	.	.	.	.	.	.	.		T
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.										.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	G	L	E	E	I	G	V	V	C	Q	Q	A	G	G	H	A	A	F	V	D	A	G	K	L	L	P	H	I	P	A	D	Q	F	P	A	Q	A	L	A	C	E	L	Y	K	V	A	G	I	R	A	V	E	I	G	S	F	L	L	G	R	D	P	K	T	G	K	Q	L	P	C	P	A	E	L	L	R	L	T
Query Conservation
Alig confidence																											.	.	.	.	.	.	.	.	.																																		.	.	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.	.																																		.	.	.	.	.
Template Sequence		I	P	I	L	Q	Q	V	F	D	V	K	L	P	D	A	S	F	Y	I	W	L	K	V	P	D	.	.	.	.	.	.	.	.	.	G	D	D	L	A	F	A	R	N	L	W	Q	K	A	A	I	Q	V	L	P	G	R	F	L	A	R	D	T	E	Q	G	N	P	.	.	.	.	.	G	E	G	Y	V	R	I	A
Template Known Secondary structure						T	T	T	S						S	S	S	S							T	T	.	.	.	.	.	.	.	.	.	S																				G	G	G	G	S			B	T	T	B		T	.	.	.	.	.	T	T	T
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.																																		.	.	.	.	.
Template SS confidence
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.										.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.						.	.	370	.	.	.	.	.
		422	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	P	R	A	T	Y	T	Q	T	H	M	D	F	I	I	E	A	F	K	H	V	K	E
Query Conservation
Alig confidence					.	.	.
Template Conservation					.	.	.
Template Sequence		L	V	A	.	.	.	D	V	A	T	C	V	K	A	A	E	D	I	V	S	L	Y	R
Template Known Secondary structure				S	.	.	.
Template Predicted Secondary structure					.	.	.
Template SS confidence
		376	.	.				.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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