Job Description P0A853 Confidence 99.82% Date Thu Jan 5 11:06:55 GMT 2012 Rank 196 Aligned Residues 332 % Identity 13% Template c3ihjA_ PDB info PDB header:transferase Chain: A: PDB Molecule:alanine aminotransferase 2; PDBTitle: human alanine aminotransferase 2 in complex with plp Resolution 2.30 Å

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		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.										.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.
Query Sequence		Y	S	G	S	R	S	Y	Y	A	L	A	E	S	V	K	N	I	F	G	Y	.	.	.	.	.	.	.	.	.	Q	Y	T	I	P	T	H	Q	G	R	G	A	E	Q	I	Y	I	P	V	L	I	K	K	R	E	Q	E	K	G	L	D	R	S	K	M	V	A	F	S	N	Y	F	F	D	T	T	Q	G	H	S	Q
Query Conservation																						.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.																										.	.	.	.	.
Template Conservation																																																								.	.	.	.	.
Template Sequence		Q	A	C	S	Q	G	V	N	C	I	R	E	D	V	A	A	Y	I	T	R	R	D	G	G	V	P	A	D	P	D	N	I	Y	L	T	T	G	A	S	D	G	I	S	T	I	L	K	I	L	V	S	G	G	G	.	.	.	.	.	K	S	R	T	G	V	M	I	P	I	P	Q	Y	P	L	Y	S	A	V	I	S
Template Known Secondary structure							S																T	T	T					G	G	G					S	S																	G	.	.	.	.	.	G	G	S								S			T
Template Predicted Secondary structure																																																								.	.	.	.	.
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.						.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.		.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure																																												.
Query SS confidence																																												.
Query Sequence		I	N	G	C	T	V	R	N	V	Y	I	K	E	A	F	D	T	G	V	R	Y	D	F	K	G	N	F	D	L	E	G	L	E	R	G	I	E	E	V	G	P	N	.	N	V	P	Y	I	V	A	T	I	T	S	N	S	A	G	G	Q	P	V	S	L	A	N	L	K	A	M	Y	S	I	A	K	K	Y	D	I	P
Query Conservation																																												.
Alig confidence																	.	.	.	.	.	.	.	.																				.															.
Template Conservation																	.	.	.	.	.	.	.	.																																			.
Template Sequence		E	L	D	A	I	Q	V	N	Y	Y	L	D	E	E	N	.	.	.	.	.	.	.	.	C	W	A	L	N	V	N	E	L	R	R	A	V	Q	E	A	K	D	H	C	D	P	K	V	L	C	I	I	N	P	G	N	P	T	.	G	Q	V	Q	S	R	K	C	I	E	D	V	I	H	F	A	W	E	E	K	L	F
Template Known Secondary structure			T	T									B	G	G	G	.	.	.	.	.	.	.	.	T	T	B														T	T	T	S									S	S		T	T	T	.																				T
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.																																			.
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.									240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.		.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.						.	.	.	.	.	.	.	270	.	.	.	.	.	.	.				.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure																																									.	.	.	.	.																.	.	.
Query SS confidence																																									.	.	.	.	.																.	.	.
Query Sequence		V	V	M	D	S	A	R	F	A	E	N	A	Y	F	I	K	Q	R	E	A	E	Y	K	D	W	T	I	E	Q	I	T	R	E	T	Y	K	Y	A	D	.	.	.	.	.	M	L	A	M	S	A	K	K	D	A	M	V	P	M	G	.	.	.	G	L	L	C	M	K	D	D	S	F	F	D	V	Y	T	E	C	R
Query Conservation																																									.	.	.	.	.																.	.	.
Alig confidence											.	.	.	.	.	.																									.	.	.	.	.																.	.	.
Template Conservation											.	.	.	.	.	.
Template Sequence		L	L	A	D	E	V	Y	Q	D	.	.	.	.	.	.	N	V	Y	S	P	D	C	R	F	H	S	F	K	K	V	L	Y	E	M	G	P	E	Y	S	S	N	V	E	L	A	S	F	H	S	T	S	K	G	Y	M	G	E	C	G	Y	R	G	G	Y	M	E	V	I	N	L	H	P	E	I	K	G	Q	L	V	K
Template Known Secondary structure							T	T	T	T	.	.	.	.	.	.		B			T	T													T						T	T									S	S	S	S	T	T			S	S	S									S
Template Predicted Secondary structure											.	.	.	.	.	.
Template SS confidence
		296	.	.	.	300	.	.	.	.							.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.													.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.		.	350	.	.	.	.	.		.	.	.	.	360	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.																										.								.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.	.	.																										.								.
Query Sequence		T	L	C	V	V	Q	E	G	F	P	T	Y	G	G	L	E	G	G	A	M	E	R	L	A	V	G	L	Y	.	.	.	.	.	.	.	.	.	.	.	.	D	G	M	N	L	D	W	L	A	Y	R	I	A	Q	V	Q	Y	L	V	D	G	L	E	E	I	.	G	V	V	C	Q	Q	A	.	G	G	H	A	A	F
Query Conservation																														.	.	.	.	.	.	.	.	.	.	.	.																										.								.
Alig confidence					.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.																										.								.
Template Conservation					.	.	.	.	.	.	.
Template Sequence		L	L	S	.	.	.	.	.	.	.	V	R	L	C	P	P	V	S	G	Q	A	A	M	D	I	V	V	N	P	P	V	A	G	E	E	S	F	E	Q	F	S	R	E	K	E	S	V	L	G	N	L	A	K	K	A	K	L	T	E	D	L	F	N	Q	V	P	G	I	H	C	N	P	L	Q	G	A	M	Y	A	F
Template Known Secondary structure					.	.	.	.	.	.	.		S															T					T	T	S	T	T																												T	S	T	T								B	S	S
Template Predicted Secondary structure					.	.	.	.	.	.	.
Template SS confidence
		370	.	.								.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.
		362	.	.	.	.	.	.	.	370	.	.					.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.				.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.
Predicted Secondary structure													.	.	.	.																																												.	.	.
Query SS confidence													.	.	.	.																																												.	.	.
Query Sequence		V	D	A	G	K	L	L	P	H	I	P	.	.	.	.	A	D	Q	F	P	A	Q	A	L	A	C	E	L	Y	K	V	A	G	I	R	A	V	E	I	G	S	F	L	L	G	R	D	P	K	T	G	K	Q	L	P	C	P	A	.	.	.	E	L	L	R	L	T	I	P	R	A	T	Y	T	Q	T	H	M	D	F
Query Conservation													.	.	.	.																																												.	.	.
Alig confidence													.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.										.	.	.
Template Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Template Sequence		P	R	I	F	I	P	A	K	A	V	E	A	A	Q	A	H	Q	M	A	P	D	M	F	Y	C	M	K	L	L	E	E	T	G	I	C	V	V	.	.	.	.	.	.	.	.	.	.	.	.	.	P	G	S	G	F	G	Q	R	E	G	T	Y	H	F	R	M	T	I	L	P	.	.	.	P	V	E	K	L	K	T
Template Known Secondary structure																	T	T	S																B				.	.	.	.	.	.	.	.	.	.	.	.	.		G	G	G	T				T	T			B							S	.	.	.
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Template SS confidence
		443	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.														480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.				500	.	.	.	.	.	.
		435	.	.	.	.	440	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	I	E	A	F	K	H	V	K	E	N	A	A	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	L	Q	K	V	K	D	F	H	I	N	F	L	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		507	.	.	510	.	.	.	.	.	.	.	.	.	520

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions