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Job DescriptionP0A853
Confidence99.95%DateThu Jan 5 11:06:55 GMT 2012
Rank66Aligned Residues327
% Identity15%Templatec3hbxB_
PDB info PDB header:lyaseChain: B: PDB Molecule:glutamate decarboxylase 1; PDBTitle: crystal structure of gad1 from arabidopsis thaliana
Resolution2.67 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   74.....80...... ...90...... ...100.........110.........120 .........130.......
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Query Sequence  YSGSRSYYALAES. . . . VKNIFGYQYT. . . . . . . IPTHQGRGAEQIYIPVLIKKREQE. . . . . KGLDRSKMVAFSNYFFD
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Template Sequence  MDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQV.
Template Known Secondary structure  TTT
TT



TT


SSTT


S

TT

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   87..90.........100.........110.........120.........130.........140.........150.........160.....
 
   138.140.........150.........160.........170.........180.........190.........200.........210.......
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Query Sequence  TTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIA
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Template Sequence  CWEKFARYFEVELKEVKLSEG. . . . . . . . . YYVMDPQQAVDMVDE. . . . NTICVAAILGSTLNG. . . . EFEDVKLLNDLL
Template Known Secondary structure  TT


BTT.........B
S



T....TBS
TTT
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B

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   166...170.........180...... ...190.........200. ........210...... ...220........
 
   218.220. ........230.........240.........250.........260.........270.........280.........290.
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Query Sequence  KKYD. . . . . . IPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVY
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Template Sequence  VEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPL. . . . . . . . . . VKSINVSGHYGLVYAGIGWVIWRNKEDLPEE
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TTGGGT
SS


STTSTT..........






SS
SSGGGS
GG
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   229230.........240.........250.........260....... ..270.........280.........290........
 
   292.... ...300.........310.........320....... ..330.........340........ .350... ......360...
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Query Sequence  TECRT. . LCVVQEGFPTYGGLEGGAMERLAVGLYDGMN. . . LDWLAYRIAQVQYLVDGLEEI. GVVCQ. . QAGGHAAFVD
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Template Sequence  LIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVSKDEGVPLVAFS
Template Known Secondary structure  G

SSSS


S

S
BSTTT

S
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   300.........310.........320.........330.........340.........350.........360.........370.........
 
   364.....370.........380.........390.........400.........410...... ...420.........430.........
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Query Sequence  AGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAE. . . . LLRLTIPRATYTQTHMDFIIEAF
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Template Sequence  LKD. . . . . . . . . . . . . . . . . . . . . SSCHTEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVV. IREDFSRTLAERLVIDI
Template Known Secondary structure  SS.....................
SS

TTT
B



TT
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TT

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   380.. .......390.........400.........410.........420 .........430.......
 
   440.........450
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Query Sequence  KHVKENAANIK
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Template Sequence  EKVMRELDELP
Template Known Secondary structure  T

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   438.440........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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