Job Description P0A853 Confidence 100.00% Date Thu Jan 5 11:06:55 GMT 2012 Rank 6 Aligned Residues 336 % Identity 18% Template c3h7fB_ PDB info PDB header:transferase Chain: B: PDB Molecule:serine hydroxymethyltransferase 1; PDBTitle: crystal structure of serine hydroxymethyltransferase from2 mycobacterium tuberculosis Resolution 1.50 Å

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		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.												.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.					.	.	.	90	.	.	.	.	.	.		.	.	.	100	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.											.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.											.
Query Sequence		L	L	D	S	E	D	V	F	I	D	L	L	T	D	S	G	T	G	A	V	T	Q	S	M	Q	A	A	M	M	.	.	.	.	.	.	.	.	.	.	.	R	G	D	E	A	Y	S	G	S	R	S	Y	Y	A	L	A	E	S	.	.	.	.	V	K	N	I	F	G	Y	Q	Y	T	.	I	P	T	H	Q	G	R
Query Conservation																															.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.											.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.											.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	I	A	S	E	N	F	V	.	.	.	.	.	.	.	.	.	.	.	.	P	R	A	V	L	Q	A	Q	G	S	V	L	T	N	K	Y	A	E	G	L	P	G	R	R	Y	Y	G	G	C	E	H	V	D	V	V	E	N	L	A	R	D	R	A	K	A	L	F	G	A	E	F	A	N	V	Q	P	H	S	G	A
Template Known Secondary structure				T	T					.	.	.	.	.	.	.	.	.	.	.	.									T	S	G	G	G	G							T	T			S	S	S																					T		S							S	S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		29	30	.	.	.	.	.	.													.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	E	Q	I	Y	I	P	V	L	I	K	K	R	E	Q	E	K	G	L	D	R	S	K	M	V	A	F	S	N	Y	F	F	D	T	T	Q	G	H	S	Q	I	N	G	C	T	V	R	N	V	Y	I	K	E	A	F	D	T	G	V	R	Y	D	F	K	G	N	F	D	L	E	G	L	E	R	G	I	E	E	V
Query Conservation
Alig confidence																																		.	.	.	.																				.	.	.	.	.	.	.	.	.																.
Template Conservation																																		.	.	.	.																				.	.	.	.	.	.	.	.	.																.
Template Sequence		Q	A	N	A	A	V	L	H	A	L	M	S	P	G	E	R	L	L	G	L	D	L	A	N	G	G	H	L	T	H	G	M	.	.	.	.	R	L	N	F	S	G	K	L	Y	E	N	G	F	Y	G	V	D	P	A	.	.	.	.	.	.	.	.	.	T	H	L	I	D	M	D	A	V	R	A	T	A	L	E	.
Template Known Secondary structure														T	T								G	G	G	T			G	G	G	T		.	.	.	.	T	T	S					S	S									T	T	.	.	.	.	.	.	.	.	.	T		S													.
Template Predicted Secondary structure																																		.	.	.	.																				.	.	.	.	.	.	.	.	.																.
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.					.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.										.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	P	N	N	V	P	Y	I	V	A	T	I	T	S	N	S	A	G	G	Q	P	V	S	L	A	N	L	K	A	M	Y	S	I	A	K	K	Y	D	I	P	V	V	M	D	S	A	R	F	A	E	N	A	Y	F	I	K	Q	R	E	A	E	Y	K	D	W	T	I	E	Q	I	T	R	E	T	Y	K	Y	A	D	M
Query Conservation
Alig confidence		.	.																		.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.																		.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	F	R	P	K	V	I	I	A	G	W	S	A	Y	P	R	V	L	.	.	.	.	.	.	D	F	A	A	F	R	S	I	A	D	E	V	G	A	K	L	L	V	D	M	A	H	F	A	G	L	V	A	A	G	L	H	P	S	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	P	H	A	D	V
Template Known Secondary structure		.	.				S							S	S			S			.	.	.	.	.	.													T								T	T	T						T	T	S	S			S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T		S
Template Predicted Secondary structure		.	.																		.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
				163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.							180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.															.	.	.	.	.	220
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.				.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure																																																																		.	.	.
Query SS confidence																																																																		.	.	.
Query Sequence		L	A	M	S	A	K	K	D	A	M	V	P	M	G	G	L	L	C	M	K	D	D	S	F	F	D	V	Y	T	E	C	R	T	L	C	V	V	Q	E	G	F	P	T	Y	G	G	L	E	G	G	A	M	E	R	L	A	V	G	L	Y	D	G	M	N	.	.	.	L	D	W	L	A	Y	R	I	A	Q	V	Q	Y
Query Conservation																																																																		.	.	.
Alig confidence									.																											.	.	.	.	.	.	.	.																							.	.	.
Template Conservation									.																											.	.	.	.	.	.	.	.
Template Sequence		V	S	T	T	V	H	T	.	L	G	G	G	R	S	G	L	I	V	G	K	Q	Q	Y	A	K	A	I	N	S	A	V	F	P	G	.	.	.	.	.	.	.	.	Q	Q	G	G	P	L	M	H	V	I	A	G	K	A	V	A	L	K	I	A	A	T	P	E	F	A	D	R	Q	R	R	T	L	S	G	A	R	I
Template Known Secondary structure									.					S								G	G	G									T	T	T	.	.	.	.	.	.	.	.	T		S	S																	T	S
Template Predicted Secondary structure									.																											.	.	.	.	.	.	.	.
Template SS confidence
		221	.	.	.	.	.	.		.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.									.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
		341	.	.	.	.						.	.	.	.	350	.	.	.	.	.			.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.		410	.	.
Predicted Secondary structure							.	.	.	.	.											.	.																																																							.
Query SS confidence							.	.	.	.	.											.	.																																																							.
Query Sequence		L	V	D	G	L	.	.	.	.	.	E	E	I	G	V	V	C	Q	Q	A	.	.	G	G	H	A	A	F	V	D	A	G	K	L	L	P	H	I	P	A	D	Q	F	P	A	Q	A	L	A	C	E	L	Y	K	V	A	G	I	R	A	V	E	I	G	S	F	L	L	G	R	D	P	K	T	G	K	.	Q	L	P
Query Conservation							.	.	.	.	.											.	.																																																							.
Alig confidence							.	.	.	.	.											.	.													.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.										.
Template Conservation																																				.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.
Template Sequence		I	A	D	R	L	M	A	P	D	V	A	K	A	G	V	S	V	V	S	G	G	T	D	V	H	L	V	L	V	D	L	R	D	S	.	.	.	.	.	.	.	.	P	L	D	G	Q	A	A	E	D	L	L	H	E	V	G	I	T	.	.	.	.	.	.	.	.	V	N	R	N	A	V	P	N	D	P	R	P	P
Template Known Secondary structure							S	S						T	T				G	G	G	S		S	S	S							T	T	S	.	.	.	.	.	.	.	.	S													T	T			.	.	.	.	.	.	.	.							T	T		S	S		T
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.
Template SS confidence
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.									.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.									.	.	.	.	.	.	350	.	.	.	.	.	.
		413	.	.	.	.	.	.	420				.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.
Query SS confidence										.	.	.
Query Sequence		C	P	A	E	L	L	R	L	.	.	.	T	I	P	R	A	T	Y	T	Q	T	H	M	D	F	I	I	E	A	F	K	H	V	K	E	N	A	A	N
Query Conservation										.	.	.
Alig confidence										.	.	.
Template Conservation
Template Sequence		M	V	T	S	G	L	R	I	G	T	P	A	L	A	T	R	G	F	G	D	T	E	F	T	E	V	A	D	I	I	A	T	A	L	A	T	G	S	S
Template Known Secondary structure		T	T		S													T																			S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.