Job Description P0A853 Confidence 99.81% Date Thu Jan 5 11:06:55 GMT 2012 Rank 203 Aligned Residues 333 % Identity 13% Template c3fdbA_ PDB info PDB header:transferase Chain: A: PDB Molecule:putative plp-dependent beta-cystathionase; PDBTitle: crystal structure of a putative plp-dependent beta-cystathionase2 (aecd, dip1736) from corynebacterium diphtheriae at 1.99 a resolution Resolution 1.99 Å

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		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.			.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.									.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure																								.	.																									.	.	.	.	.	.	.	.
Query SS confidence																								.	.																									.	.	.	.	.	.	.	.
Query Sequence		F	I	D	L	L	T	D	S	G	T	G	A	V	T	Q	S	M	Q	A	A	M	M	.	.	R	G	D	E	A	Y	S	G	S	R	S	Y	Y	A	L	A	E	S	V	K	N	I	F	G	.	.	.	.	.	.	.	.	Y	Q	Y	T	I	P	T	H	Q	G	R	G	A	E	Q	I	Y	I	P	V	L	I	K	K
Query Conservation																								.	.																									.	.	.	.	.	.	.	.
Alig confidence																								.	.																									.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	L	P	L	W	V	A	E	S	D	F	S	T	C	P	A	V	L	Q	A	I	T	D	A	V	Q	R	E	A	F	G	Y	Q	P	D	G	S	L	L	S	Q	A	T	A	E	F	Y	A	D	R	Y	G	Y	Q	A	R	P	E	W	I	F	P	I	P	D	V	V	R	G	L	Y	I	A	I	D	H	F	T	P	A
Template Known Secondary structure		S					S	S				S																T	T			S	S			S	S																					G	G	G					S														S		T
Template Predicted Secondary structure
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	Q	E	K	G	L	D	R	S	K	M	V	A	F	S	N	Y	F	F	D	T	T	Q	G	H	S	Q	I	N	G	C	T	V	R	N	V	Y	I	K	E	A	F	D	T	G	V	R	Y	D	F	K	G	N	F	D	L	E	G	L	E	R	G	I	E	E	V	G	P	N	N	V	P	Y	I	V	A	T	I	T
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Template Sequence		Q	S	K	V	I	V	P	T	P	.	.	.	.	.	.	.	.	.	A	Y	P	P	F	F	H	L	L	S	A	T	Q	R	E	G	I	F	I	D	A	T	.	.	.	.	.	.	.	.	.	.	.	.	G	G	I	N	L	H	D	V	E	K	G	F	Q	A	.	.	.	.	G	A	R	S	I	L	L	C	N	P
Template Known Secondary structure		T								S	.	.	.	.	.	.	.	.	.			T										T									T	.	.	.	.	.	.	.	.	.	.	.	.	T	S												T	.	.	.	.	T								S	S
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Template SS confidence
		104	.	.	.	.	.	110	.	.										.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.													.	.	.	.	.	140	.	.	.	.	.	.	.	.					.	150	.	.	.	.	.	.	.	.
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	N	S	A	G	G	Q	P	V	S	L	A	N	L	K	A	M	Y	S	I	A	K	K	Y	D	I	P	V	V	M	D	S	A	R	F	A	E	N	A	Y	F	I	K	Q	R	E	A	E	Y	K	D	W	T	I	E	Q	I	T	R	E	T	Y	K	Y	A	D	M	L	A	M	S	A	K	K	D	A	M	V	P	M
Query Conservation
Alig confidence						.																															.	.	.	.	.	.	.	.	.	.
Template Conservation						.																															.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	N	P	L	.	G	X	V	F	A	P	E	W	L	N	E	L	C	D	L	A	H	R	Y	D	A	R	V	L	V	D	E	I	H	A	.	.	.	.	.	.	.	.	.	.	P	L	V	F	D	G	Q	H	T	V	A	A	G	V	S	D	T	A	A	S	V	C	I	T	I	T	A	P	S	A	W	N	I	A	G
Template Known Secondary structure		B	T	T	T	.	T	B																	T	T								T	T	G	.	.	.	.	.	.	.	.	.	.	G	G	B	S	S	S					G	G	G	S																				G	G
Template Predicted Secondary structure						.																															.	.	.	.	.	.	.	.	.	.
Template SS confidence
		159	160	.	.		.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.											.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
				277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.			.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.			.	350
Predicted Secondary structure		.	.																																																				.	.																						.	.
Query SS confidence		.	.																																																				.	.																						.	.
Query Sequence		.	.	G	G	L	L	C	M	K	D	D	S	F	F	D	V	Y	T	E	C	R	T	L	C	V	V	Q	E	G	F	P	T	Y	G	G	L	E	G	G	A	M	E	R	L	A	V	G	L	Y	D	G	M	N	.	.	L	D	W	L	A	Y	R	I	A	Q	V	Q	Y	L	V	D	G	L	E	E	I	.	.	G	V
Query Conservation		.	.																																																				.	.																						.	.
Alig confidence		.	.																						.	.	.	.	.	.	.	.																							.	.																						.	.
Template Conservation																									.	.	.	.	.	.	.	.
Template Sequence		L	K	C	A	Q	I	I	F	S	N	P	S	D	A	E	H	W	Q	Q	L	S	P	V	.	.	.	.	.	.	.	.	I	K	D	G	A	S	T	L	G	L	I	A	A	E	A	A	Y	R	Y	G	T	D	F	L	N	Q	E	V	A	Y	L	K	N	N	H	D	F	L	L	H	E	I	P	K	R	I	P	G	A
Template Known Secondary structure		G									S										S				.	.	.	.	.	.	.	.																																														S	T	T
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.									.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
		351	.	.	.	.		.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.
Predicted Secondary structure							.
Query SS confidence							.
Query Sequence		V	C	Q	Q	A	.	G	G	H	A	A	F	V	D	A	G	K	L	L	P	H	I	P	A	D	Q	F	P	A	Q	A	L	A	C	E	L	Y	K	V	A	G	I	R	A	V	E	I	G	S	F	L	L	G	R	D	P	K	T	G	K	Q	L	P	C	P	A	E	L	L	R	L	T	I	P	R	A	T	Y	T	Q
Query Conservation							.
Alig confidence							.													.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.															.	.	.
Template Conservation																				.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.															.	.	.
Template Sequence		K	I	T	P	X	Q	A	T	Y	L	X	W	I	D	F	R	D	T	.	.	.	.	.	.	.	.	T	I	E	G	S	P	S	E	F	F	I	E	K	A	K	V	A	X	N	D	G	A	W	F	.	.	.	.	.	.	.	.	.	.	.	G	E	D	G	T	G	F	C	R	L	N	F	A	T	.	.	.	S	R
Template Known Secondary structure							S	B		S							T	T	S	.	.	.	.	.	.	.	.				S																	G	G	G	G	.	.	.	.	.	.	.	.	.	.	.		G	G	G	T	T								S	.	.	.
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.															.	.	.
Template SS confidence
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.									.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.												.	.	.	.	.	.	.	350	.	.	.	.	.	.				.	.
		430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	H	M	D	F	I	I	E	A	F	K	H	V	K	E	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	V	L	E	E	A	I	D	R	X	A	K	A	V	S	H
Template Known Secondary structure																T	T
Template Predicted Secondary structure
Template SS confidence
		359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions