Job Description P0A853 Confidence 100.00% Date Thu Jan 5 11:06:55 GMT 2012 Rank 16 Aligned Residues 400 % Identity 13% Template c3fcrA_ PDB info PDB header:transferase Chain: A: PDB Molecule:putative aminotransferase; PDBTitle: crystal structure of putative aminotransferase (yp_614685.1) from2 silicibacter sp. tm1040 at 1.80 a resolution Resolution 1.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	E	P	F	R	I	R	V	I	E	P	V	K	R	T	T	R	A	Y	R	E	E	A	I	I	K	S	G	M	N	P	F	L	L	D	S	E	D	V	F	I	D	L	L	T	D	S	G	T	G	A	V	T	Q	S	M	Q	A	A	M	M	R	G	D	E	A	Y	S	G	S	R	S	Y	Y	A	L	A	E	S	V
Query Conservation
Alig confidence																																											.	.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.	.
Template Sequence		S	A	N	R	V	I	K	T	A	S	G	V	F	I	E	D	R	D	G	T	K	L	L	D	A	F	A	G	L	Y	C	V	N	V	G	Y	G	R	Q	E	I	.	.	.	.	.	.	.	A	E	A	I	A	D	Q	A	R	E	L	A	Y	Y	H	S	Y	V	G	H	G	T	E	A	S	I	T	L	A	K	X	I
Template Known Secondary structure		S										B	T					T	T							T	T					T			S		B						.	.	.	.	.	.	.												S						T	T
Template Predicted Secondary structure																																											.	.	.	.	.	.	.
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70								.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
		88	.	90	.			.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure						.	.
Query SS confidence						.	.
Query Sequence		K	N	I	F	.	.	G	Y	Q	Y	T	I	P	T	H	Q	G	R	G	A	E	Q	I	Y	I	P	V	L	I	K	K	R	E	Q	E	K	G	L	D	R	S	K	M	V	A	F	S	N	Y	F	F	D	T	T	Q	G	H	S	Q	I	N	G	C	T	V	R	N	V	Y	I	K	E	A	F	D	T	G	V	R	Y
Query Conservation						.	.
Alig confidence						.	.
Template Conservation
Template Sequence		L	D	R	A	P	K	N	X	S	K	V	Y	F	G	L	G	G	S	D	A	N	E	T	N	V	K	L	I	W	Y	Y	N	N	I	L	G	R	P	E	K	K	K	I	I	S	R	W	R	G	Y	H	G	S	G	L	V	T	G	S	L	T	G	L	E	L	F	H	K	K	F	D	L	P	V	E	Q	V	I	H	T
Template Known Secondary structure					S		T	T								S	S																			T	T		T	T								T	T					S	S							S			G	G	G	T	T	T	T	T		S		T	T
Template Predicted Secondary structure
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		166	.	.	.	170	.	.																.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	F	K	G	N	F	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	E	G	L	E	R	G	I	E	E	V	G	P	N	N	V	P	Y	I	V	A	T	I	T	S	N	S	A	G	G	Q	P	V	S	L	A	N	L	K	A	M	Y	S	I	A	K	K	Y	D	I	P	V	V	M	D	S	A	R
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																								.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		E	A	P	Y	Y	F	R	R	E	D	L	N	Q	T	E	E	Q	F	V	A	H	C	V	A	E	L	E	A	L	I	E	R	E	G	A	D	T	I	A	A	F	I	G	E	P	I	L	G	T	G	G	I	V	P	P	P	A	G	Y	W	E	A	I	Q	T	V	L	N	K	H	D	I	L	L	V	A	D	.	.	.
Template Known Secondary structure				S		G	G	G		S		T	T																							G	G	G								S	S	B	S	T	T	T		B				T	T													T							.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure
Query SS confidence
Query Sequence		F	A	E	N	A	Y	F	I	K	Q	R	E	A	E	Y	K	D	W	T	I	E	Q	I	T	R	E	T	Y	K	Y	A	D	M	L	A	M	S	A	K	K	D	A	M	V	P	M	G	G	L	L	C	M	K	D	D	S	F	F	D	V	Y	T	E	C	R	T	L	C	V	V	Q	E	G	F	P	T	Y	G	G	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.																																																																		.
Template Conservation		.	.	.	.	.	.	.	.	.																																																																		.
Template Sequence		.	.	.	.	.	.	.	.	.	E	V	V	T	G	F	G	R	L	G	T	X	F	G	S	D	H	Y	G	L	E	P	D	I	I	T	I	A	K	G	L	T	S	A	Y	A	P	L	S	G	S	I	V	S	D	K	V	W	K	V	L	E	Q	G	T	D	E	N	G	P	I	G	H	G	W	.	T	Y	S	A	H
Template Known Secondary structure		.	.	.	.	.	.	.	.	.		T	T	T	S	S	S	T	T	S	S	S							T				S						G	G	G	T	T	T	S	S																								S		S				.	T	T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.																																																																		.
Template SS confidence
											260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.		.	.	.	.	.
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.						.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.				.	.	.	.	.	.	.	380	.	.
Predicted Secondary structure																																													.	.	.	.	.																				.	.	.
Query SS confidence																																													.	.	.	.	.																				.	.	.
Query Sequence		E	G	G	A	M	E	R	L	A	V	G	L	Y	D	G	M	N	L	D	W	L	A	Y	R	I	A	Q	V	Q	Y	L	V	D	G	L	E	E	I	G	V	V	C	Q	.	.	.	.	.	Q	A	G	G	H	A	A	F	V	D	A	G	K	L	L	P	H	I	P	.	.	.	A	D	Q	F	P	A	Q	A	L	A
Query Conservation																																													.	.	.	.	.																				.	.	.
Alig confidence												.																																	.	.	.	.	.																				.	.	.
Template Conservation												.
Template Sequence		P	I	G	A	A	A	G	V	A	N	.	L	K	L	L	D	E	L	N	L	V	S	N	A	G	E	V	G	A	Y	L	N	A	T	X	A	E	A	L	S	Q	H	A	N	V	G	D	V	R	G	E	G	L	L	C	A	V	E	F	V	K	D	R	D	S	R	T	F	F	D	A	A	D	K	I	G	P	Q	I	S
Template Known Secondary structure												.							T	T																					T	T	S	T	T							S	S	S								S	B	T	T	T	T	B				G	G	G
Template Predicted Secondary structure												.
Template SS confidence
		330	.	.	.	.	.	.	.	.	.		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	E	L	Y	K	V	A	G	I	R	A	V	E	I	G	S	F	L	L	G	R	D	P	K	T	G	K	Q	L	P	C	P	A	E	L	L	R	L	T	I	P	R	A	T	Y	T	Q	T	H	M	D	F	I	I	E	A	F	K	H	V	K	E	N
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.
Template Sequence		A	K	L	L	E	Q	D	K	I	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	R	A	X	P	Q	G	D	I	L	G	F	A	.	P	P	F	C	L	T	R	A	E	A	D	Q	V	V	E	G	T	L	R	A	V	K	A
Template Known Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S	S	S	S						.			T	T
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.
Template SS confidence
		409	410	.	.	.	.	.	.	.	.																	.	420	.	.	.	.	.	.	.	.	.	430	.		.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.