Job Description P0A853 Confidence 99.78% Date Thu Jan 5 11:06:55 GMT 2012 Rank 214 Aligned Residues 340 % Identity 14% Template c3ezsB_ PDB info PDB header:transferase Chain: B: PDB Molecule:aminotransferase aspb; PDBTitle: crystal structure of aminotransferase aspb (np_207418.1) from2 helicobacter pylori 26695 at 2.19 a resolution Resolution 2.19 Å

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		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.				.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.									.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.																									.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.																									.	.	.	.	.	.	.	.
Query Sequence		L	D	S	E	D	V	F	I	D	L	L	T	D	S	G	T	G	A	V	T	Q	S	M	Q	A	A	M	M	.	.	.	R	G	D	E	A	Y	S	G	S	R	S	Y	Y	A	L	A	E	S	V	K	N	I	F	G	.	.	.	.	.	.	.	.	Y	Q	Y	T	I	P	T	H	Q	G	R	G	A	E	Q	I	Y
Query Conservation																														.	.	.																									.	.	.	.	.	.	.	.
Alig confidence																														.	.	.																									.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	T	P	K	K	R	G	L	D	L	G	I	G	E	P	Q	F	E	T	P	K	F	I	Q	D	A	L	K	N	H	T	H	S	L	N	I	Y	P	K	S	A	F	E	E	S	L	R	A	A	Q	R	G	F	F	K	R	R	F	K	I	E	L	K	E	N	E	L	I	S	T	L	G	S	R	E	V	L	F	N	F
Template Known Secondary structure					S	S				B					S			S												T	T	G	G	G	G	G	S				T	T																		S					G	G	G					S	S	S
Template Predicted Secondary structure
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		110	.	.	.	.			.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure							.	.
Query SS confidence							.	.
Query Sequence		I	P	V	L	I	.	.	K	K	R	E	Q	E	K	G	L	D	R	S	K	M	V	A	F	S	N	Y	F	F	D	T	T	Q	G	H	S	Q	I	N	G	C	T	V	R	N	V	Y	I	K	E	A	F	D	T	G	V	R	Y	D	F	K	G	N	F	D	L	E	G	L	E	R	G	I	E	E	V	G	P	N	N
Query Conservation							.	.
Alig confidence							.	.												.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Template Sequence		P	S	F	V	L	F	D	Y	Q	N	P	T	I	A	Y	P	N	P	.	.	.	.	.	.	.	.	.	F	Y	Q	I	Y	E	G	A	A	K	F	I	K	A	K	S	L	L	X	P	L	T	K	.	.	.	.	.	.	.	.	.	.	.	E	N	D	F	T	P	S	L	N	E	K	E	L	Q	.	.	.	.	E
Template Known Secondary structure						T	T	T		S	S								S	.	.	.	.	.	.	.	.	.			T									T	T										G	.	.	.	.	.	.	.	.	.	.	.	G	G	T	T											.	.	.	.
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.										.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.												.	140	.	.	.	.	.	.	.	.	.	150	.	.					.
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P	Y	I	V	A	T	I	T	S	N	S	A	G	G	Q	P	V	S	L	A	N	L	K	A	M	Y	S	I	A	K	K	Y	D	I	P	V	V	M	D	S	A	R	F	A	E	N	A	Y	F	I	K	Q	R	E	A	E	Y	K	D	W	T	I	E	Q	I	T	R	E	T	Y	K	Y	A	D	M	L	A	M	S
Query Conservation
Alig confidence															.																															.	.	.	.	.
Template Conservation															.																															.	.	.	.	.
Template Sequence		V	D	L	V	I	L	N	S	P	N	N	P	T	.	G	R	T	L	S	L	E	E	L	I	S	W	V	K	L	A	L	K	H	D	F	I	L	I	N	D	E	C	Y	S	.	.	.	.	.	E	I	Y	E	N	T	P	P	P	S	L	L	E	A	C	X	L	A	G	N	E	A	F	K	N	V	L	V	I	H	S
Template Known Secondary structure			S						S	S		T	T	T	.																			T	T								T	T	T	.	.	.	.	.	T		B	S	S	S												T	T		T	T		T	T
Template Predicted Secondary structure															.																															.	.	.	.	.
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.		.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.						.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		268	.	270	.	.	.	.	.	.			.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure											.	.
Query SS confidence											.	.
Query Sequence		A	K	K	D	A	M	V	P	M	.	.	G	G	L	L	C	M	K	D	D	S	F	F	D	V	Y	T	E	C	R	T	L	C	V	V	Q	E	G	F	P	T	Y	G	G	L	E	G	G	A	M	E	R	L	A	V	G	L	Y	D	G	M	N	L	D	W	L	A	Y	R	I	A	Q	V	Q	Y	L	V	D	G	L
Query Conservation											.	.
Alig confidence											.	.																					.	.	.	.	.	.	.	.	.																			.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.																			.	.	.
Template Sequence		L	S	K	R	S	S	A	P	G	L	R	S	G	F	I	A	G	D	S	R	L	L	E	K	Y	K	A	F	R	A	Y	.	.	.	.	.	.	.	.	.	L	G	Y	T	S	A	N	A	I	Q	K	A	S	E	A	A	W	L	.	.	.	D	D	R	H	A	E	F	F	R	N	I	Y	A	N	N	L	K	L	A
Template Known Secondary structure		S					T		G	G	G																						.	.	.	.	.	.	.	.	.																			.	.	.		S
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.																			.	.	.
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.										.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.				.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
		346	.	.	.	350		.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.
Predicted Secondary structure							.
Query SS confidence							.
Query Sequence		E	E	I	G	V	.	V	C	Q	Q	A	G	G	H	A	A	F	V	D	A	G	K	L	L	P	H	I	P	A	D	Q	F	P	A	Q	A	L	A	C	E	L	Y	K	V	A	G	I	R	A	V	E	I	G	S	F	L	L	G	R	D	P	K	T	G	K	Q	L	P	C	P	A	E	L	L	R	L	T	I	P	R
Query Conservation							.
Alig confidence							.																	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.														.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.														.	.
Template Sequence		R	K	I	F	K	N	T	L	I	Y	P	Y	S	F	Y	V	Y	L	P	V	Q	N	.	.	.	.	.	.	.	.	.	.	.	G	E	N	F	A	K	T	L	Y	Q	N	E	G	I	I	T	L	P	A	L	Y	L	G	.	.	.	.	.	.	.	.	.	R	N	R	I	G	A	D	Y	V	R	L	A	L	.	.
Template Known Secondary structure					S	T	T					S	B	S	S							S		.	.	.	.	.	.	.	.	.	.	.															B				G	G	G	G		.	.	.	.	.	.	.	.	.	S	T	T	T	T	T	T							.	.
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.														.	.
Template SS confidence
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.												.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340										.	.	.	.	.	.	.	.	.	350	.	.	.
		425	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	Y	T	Q	T	H	M	D	F	I	I	E	A	F	K	H	V	K	E	N
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	V	Y	D	T	P	L	L	E	K	P	L	E	I	I	E	T	Y	R	E	N
Template Known Secondary structure		.		S																		T
Template Predicted Secondary structure		.
Template SS confidence
			354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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