Job Description P0A853 Confidence 99.71% Date Thu Jan 5 11:06:55 GMT 2012 Rank 225 Aligned Residues 321 % Identity 14% Template c3ez1A_ PDB info PDB header:transferase Chain: A: PDB Molecule:aminotransferase mocr family; PDBTitle: crystal structure of putative aminotransferase (mocr family)2 (yp_604413.1) from deinococcus geothermalis dsm 11300 at 2.60 a3 resolution Resolution 2.60 Å

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		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.			.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110														.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	S	G	S	R	S	Y	Y	A	L	A	E	S	V	K	N	I	F	G	Y	Q	.	.	Y	T	I	P	T	H	Q	G	R	G	A	E	Q	I	Y	I	.	.	.	.	.	.	.	.	.	.	.	.	.	P	V	L	I	K	K	R	E	Q	E	K	G	L	D	R	S	K	M	V	A	F	S	N	Y	F	F	D	T
Query Conservation																							.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.
Template Conservation																																																																					.	.	.	.	.	.	.	.	.
Template Sequence		P	G	G	V	A	G	L	P	S	A	R	A	L	F	A	G	Y	L	D	V	K	A	E	N	V	L	V	W	N	N	S	S	L	E	L	Q	G	L	V	L	T	F	A	L	L	H	G	V	R	G	S	T	G	P	W	L	S	Q	T	P	K	X	I	V	T	V	P	.	.	.	.	.	.	.	.	.	G	Y	D	R
Template Known Secondary structure			S		T	T													T	T	S		G	G	G					S	S																T			T	T		S	S		G	G	G	G									S	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																					.	.	.	.	.	.	.	.	.
Template SS confidence
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.										.	.	.	.
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.		.
Predicted Secondary structure																																																																																.
Query SS confidence																																																																																.
Query Sequence		T	Q	G	H	S	Q	I	N	G	C	T	V	R	N	V	Y	I	K	E	A	F	D	T	G	V	R	Y	D	F	K	G	N	F	D	L	E	G	L	E	R	G	I	E	E	V	G	P	N	N	V	P	Y	I	V	A	T	I	T	S	N	S	A	G	G	Q	P	V	S	L	A	N	L	K	A	M	Y	S	I	.	A
Query Conservation																																																																																.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.															.																		.																.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.															.																		.
Template Sequence		H	F	L	L	L	Q	T	L	G	F	E	L	L	T	V	D	X	Q	S	.	.	.	.	.	.	.	.	.	.	.	D	G	P	D	V	D	A	V	E	R	L	A	G	T	.	D	P	S	V	K	G	I	L	F	V	P	T	Y	S	N	P	G	.	G	E	T	I	S	L	E	K	A	R	R	L	A	G	L	Q	A
Template Known Secondary structure										T										T	.	.	.	.	.	.	.	.	.	.	.	T													S	.		T	T								S	S	S		T	T	T	.														T
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.															.																		.
Template SS confidence
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.												.	.	.	.	.	160	.	.	.	.	.	.	.	.		.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.		.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.			.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure																																																													.	.
Query SS confidence																																																													.	.
Query Sequence		K	K	Y	D	I	P	V	V	M	D	S	A	R	F	A	E	N	A	Y	F	I	K	Q	R	E	A	E	Y	K	D	W	T	I	E	Q	I	T	R	E	T	Y	K	Y	A	D	M	L	A	M	S	A	K	K	D	A	M	V	P	M	.	.	G	G	L	L	C	M	K	D	D	S	F	F	D	V	Y	T	E	C	R
Query Conservation																																																													.	.
Alig confidence																	.	.	.	.																																									.	.
Template Conservation																	.	.	.	.
Template Sequence		A	A	P	D	F	T	I	F	A	D	D	A	Y	R	V	.	.	.	.	H	H	L	V	E	E	D	R	A	E	P	V	N	F	V	V	L	A	R	D	A	G	Y	P	D	R	A	F	V	F	A	S	T	S	K	I	T	F	A	G	A	G	L	G	F	V	A	S	S	E	D	N	I	R	W	L	S	K	Y	L	G
Template Known Secondary structure		S	S	T	T								T	T	S	S	.	.	.	.		B			S	S	S															T		T	T	S							S	T	T	T	S		S	S	S	S
Template Predicted Secondary structure																	.	.	.	.
Template SS confidence
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.					.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.											.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.				.	.	.	.	.	.	360	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.																															.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.																															.	.	.
Query Sequence		T	L	C	V	V	Q	E	G	F	P	T	Y	G	G	L	E	G	G	A	M	E	R	L	A	V	G	L	Y	.	.	.	.	.	.	.	.	.	.	D	G	M	N	L	D	W	L	A	Y	R	I	A	Q	V	Q	Y	L	V	D	G	L	E	E	I	G	V	V	C	Q	.	.	.	Q	A	G	G	H	A	A	F	V
Query Conservation																														.	.	.	.	.	.	.	.	.	.																															.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.																															.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.
Template Sequence		A	.	.	.	.	.	.	.	.	.	Q	S	I	G	P	N	K	V	E	Q	A	R	H	V	K	F	L	T	E	Y	P	G	G	L	E	G	L	X	R	D	H	A	A	I	I	A	P	K	F	R	A	V	D	E	V	L	R	A	E	L	G	E	G	G	E	Y	A	T	W	T	L	P	K	G	G	Y	F	I	S	L
Template Known Secondary structure			.	.	.	.	.	.	.	.	.	S		S																	S	T	T																													T	T	T	T	S	S							S	B	S	S
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.
Template SS confidence
		279										280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	G	K	L	L	P	H	I	P	A	D	Q	F	P	A	Q	A	L	A	C	E	L	Y	K	V	A	G	I	R	A	V	E	I	G	S	F	L	L	G	R	D	P	K	T	G	K	Q	L	P	C	P	A	E	L	L	R	L	T	I	P	R	A	T	Y	T	Q	T	H	M	D	F	I	I	E	A	F	K	H	V
Query Conservation
Alig confidence						.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.																.				.
Template Conservation						.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.																.				.
Template Sequence		D	T	A	E	.	.	.	.	.	.	.	.	.	.	P	V	A	D	R	V	V	K	L	A	E	A	A	G	V	S	L	T	P	A	G	A	T	Y	.	.	.	.	.	.	.	P	A	G	Q	D	P	H	N	R	N	L	R	L	A	P	.	T	R	P	.	P	V	E	E	V	R	T	A	X	Q	V	V	A	A	C
Template Known Secondary structure				S	S	.	.	.	.	.	.	.	.	.	.	S												T	T						T	T	T	T	S	.	.	.	.	.	.	.	S	T	T			S	S	S								.	S	S	S	.
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.																.				.
Template SS confidence
		350	.	.	.											.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.								.	.	380	.	.	.	.	.	.	.	.	.	390	.	.		.	.	.		.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
		443	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	E	N	A	A	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	R	L	A	T	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		411	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions