Job Description P0A853 Confidence 99.87% Date Thu Jan 5 11:06:55 GMT 2012 Rank 153 Aligned Residues 344 % Identity 12% Template c3dzzB_ PDB info PDB header:transferase Chain: B: PDB Molecule:putative pyridoxal 5'-phosphate-dependent c-s lyase; PDBTitle: crystal structure of a putative plp-dependent aminotransferase2 (lbul_1103) from lactobacillus delbrueckii subsp. at 1.61 a3 resolution Resolution 1.61 Å

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		49	50	.	.	.	.	.	.				.	.	.	60	.	.	.	.	.	.	.	.			.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90									.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure										.	.	.													.	.																							.	.	.	.	.	.	.	.
Query SS confidence										.	.	.													.	.																							.	.	.	.	.	.	.	.
Query Sequence		D	L	L	T	D	S	G	T	.	.	.	G	A	V	T	Q	S	M	Q	A	A	M	M	.	.	R	G	D	E	A	Y	S	G	S	R	S	Y	Y	A	L	A	E	S	V	K	N	I	.	.	.	.	.	.	.	.	F	G	Y	Q	Y	T	I	P	T	H	Q	G	R	G	A	E	Q	I	Y	I	P	V	L	I	K
Query Conservation										.	.	.													.	.																							.	.	.	.	.	.	.	.
Alig confidence										.	.	.													.	.																							.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	E	L	P	X	W	I	A	E	X	D	F	K	I	A	P	E	I	X	A	S	X	E	E	K	L	K	V	A	A	F	G	Y	E	S	V	P	A	E	Y	Y	K	A	V	A	D	W	E	E	I	E	H	R	A	R	P	K	E	D	W	C	V	F	A	S	G	V	V	P	A	I	S	A	X	V	R	Q	F	T	S
Template Known Secondary structure		T						S	S			S	S															T	T																									S					G	G	G					S														S
Template Predicted Secondary structure
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	R	E	Q	E	K	G	L	D	R	S	K	M	V	A	F	S	N	Y	F	F	D	T	T	Q	G	H	S	Q	I	N	G	C	T	V	R	N	V	Y	I	K	E	A	F	D	T	G	V	R	Y	D	F	K	G	N	F	D	L	E	G	L	E	R	G	I	E	E	V	G	P	N	N	V	P	Y	I	V	A	T	I
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.																			.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.																			.	.	.
Template Sequence		P	G	D	Q	I	L	V	Q	E	P	.	.	.	.	.	.	.	.	.	V	Y	N	X	F	Y	S	V	I	E	G	N	G	R	R	V	I	S	S	D	L	I	Y	.	.	.	.	.	.	.	E	N	S	K	Y	S	V	N	W	A	D	L	E	E	K	L	A	T	.	.	.	P	S	V	R	X	X	V	F	C	N
Template Known Secondary structure		T	T							S	S	.	.	.	.	.	.	.	.	.			T								T	T	T											.	.	.	.	.	.	.		T	T														T	S	.	.	.	T	T								S
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.																			.	.	.
Template SS confidence
		107	.	.	110	.	.	.	.	.	.										.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.								140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.				.	.	160	.	.	.	.	.	.	.
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	S	N	S	A	G	G	Q	P	V	S	L	A	N	L	K	A	M	Y	S	I	A	K	K	Y	D	I	P	V	V	M	D	S	A	R	F	A	E	N	A	Y	F	I	K	Q	R	E	A	E	Y	K	D	W	T	I	E	Q	I	T	R	E	T	Y	K	Y	A	D	M	L	A	M	S	A	K	K	D	A	M	V	P
Query Conservation
Alig confidence							.																																.	.	.	.	.	.	.
Template Conservation							.																																.	.	.	.	.	.	.
Template Sequence		P	H	N	P	I	.	G	Y	A	W	S	E	E	E	V	K	R	I	A	E	L	C	A	K	H	Q	V	L	L	I	S	D	E	I	H	G	D	.	.	.	.	.	.	.	L	V	L	T	D	E	D	I	T	P	A	F	T	V	D	W	D	A	K	N	W	V	V	S	L	I	S	P	S	T	F	N	L	A	A	L
Template Known Secondary structure		S	B	T	T	T	.	T	B																	T	T								T	T	G	G	.	.	.	.	.	.	.	G	B		S	S						G	G	G	S		T	T	G	G	G	G											S		G	G	G
Template Predicted Secondary structure							.																																.	.	.	.	.	.	.
Template SS confidence
		168	.	170	.	.		.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.								.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		M	G	G	L	L	C	M	K	D	D	S	F	F	D	V	Y	T	E	C	R	T	L	C	V	V	Q	E	G	F	P	T	Y	G	G	L	E	G	G	A	M	E	R	L	A	V	G	L	Y	D	G	M	N	L	D	W	L	A	Y	R	I	A	Q	V	Q	Y	L	V	D	G	L	E	E	I	G	V	V	C	Q	.	.
Query Conservation																																																																																.	.
Alig confidence																									.	.	.	.	.																																																			.	.
Template Conservation																									.	.	.	.	.
Template Sequence		H	A	A	C	A	I	I	P	N	P	D	L	R	A	R	A	E	E	S	F	F	L	A	.	.	.	.	.	G	I	G	E	P	N	L	L	A	I	P	A	A	I	A	A	Y	E	E	G	H	D	W	L	R	E	L	K	Q	V	L	R	D	N	F	A	Y	A	R	E	F	L	A	K	E	V	P	E	V	K	V	L
Template Known Secondary structure										S															.	.	.	.	.	T		S	S			T	T																																							T	T	S
Template Predicted Secondary structure																									.	.	.	.	.
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.						.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
			354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	Q	A	G	G	H	A	A	F	V	D	A	G	K	L	L	P	H	I	P	A	D	Q	F	P	A	Q	A	L	A	C	E	L	Y	K	V	A	G	I	R	A	V	E	I	G	S	F	L	L	G	R	D	P	K	T	G	K	Q	L	P	C	P	A	E	L	L	R	L	T	I	P	R	A	T	Y	T	Q	T	H	M
Query Conservation		.
Alig confidence		.											.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.															.	.	.
Template Conservation													.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.															.	.	.
Template Sequence		D	S	N	A	S	Y	L	A	W	V	D	.	.	.	.	.	.	.	I	S	A	L	G	X	N	A	E	D	F	C	K	Y	L	R	E	K	T	G	L	I	I	S	A	G	N	G	Y	.	.	.	.	.	.	.	.	.	.	.	R	G	N	G	H	E	F	V	R	I	N	L	A	C	.	.	.	P	K	E	L	V
Template Known Secondary structure				S	B	S	S						.	.	.	.	.	.	.		G	G	G		S																				G	G	G	G	.	.	.	.	.	.	.	.	.	.	.		T	T	G	G	G								S	.	.	.
Template Predicted Secondary structure													.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.															.	.	.
Template SS confidence
		316	.	.	.	320	.	.	.	.	.	.								.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.												.	.	.	.	360	.	.	.	.	.	.	.	.	.				370	.	.	.	.
		433	.	.	.	.	.	.	440	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	F	I	I	E	A	F	K	H	V	K	E	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	D	G	X	Q	R	L	K	Q	G	V	L	N
Template Known Secondary structure														T
Template Predicted Secondary structure
Template SS confidence
		375	.	.	.	.	380	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions