Job Description P0A853 Confidence 99.86% Date Thu Jan 5 11:06:55 GMT 2012 Rank 169 Aligned Residues 356 % Identity 14% Template c3cbfA_ PDB info PDB header:transferase Chain: A: PDB Molecule:alpha-aminodipate aminotransferase; PDBTitle: crystal structure of lysn, alpha-aminoadipate2 aminotransferase, from thermus thermophilus hb27 Resolution 1.67 Å

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		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.			.	.	.	.	.	.	60	.	.	.	.	.	.	.	.						.	70	.	.	.			.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.			.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.																.	.	.	.	.						.	.																						.	.
Query SS confidence																	.	.																.	.	.	.	.						.	.																						.	.
Query Sequence		F	L	L	D	S	E	D	V	F	I	D	L	L	T	D	.	.	S	G	T	G	A	V	T	Q	S	M	Q	A	A	M	M	.	.	.	.	.	R	G	D	E	A	.	.	Y	S	G	S	R	S	Y	Y	A	L	A	E	S	V	K	N	I	F	G	Y	Q	.	.	Y	T	I	P	T	H	Q	G	R	G	A	E	Q
Query Conservation																	.	.																.	.	.	.	.						.	.																						.	.
Alig confidence																	.	.																.	.	.	.	.						.	.																						.	.
Template Conservation
Template Sequence		L	K	L	T	Q	R	P	G	I	L	S	F	A	G	G	L	P	A	P	E	L	F	P	K	E	E	A	A	E	A	A	A	R	I	L	R	E	K	G	E	V	A	L	Q	Y	S	P	T	E	G	Y	A	P	L	R	A	F	V	A	E	W	I	G	V	R	P	E	E	V	L	I	T	T	G	S	Q	Q	A	L	D
Template Known Secondary structure						T	S	T	T					S	S					G	G	G	S																					T	S				T	T														T	S		G	G	G					S	S
Template Predicted Secondary structure
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	Y	I	P	V	L	I	K	K	R	E	Q	E	K	G	L	D	R	S	K	M	V	A	F	S	N	Y	F	F	D	T	T	Q	G	H	S	Q	I	N	G	C	T	V	R	N	V	Y	I	K	E	A	F	D	T	G	V	R	Y	D	F	K	G	N	F	D	L	E	G	L	E	R	G	I	E	E	V	G	P	N	N
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.															.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.															.	.	.
Template Sequence		L	V	G	K	V	F	L	D	E	G	S	P	V	L	L	E	A	P	.	.	.	.	.	.	.	.	.	S	Y	M	G	A	I	Q	A	F	R	L	Q	G	P	R	F	L	T	V	P	A	G	E	.	.	.	.	.	.	.	.	.	.	.	E	G	P	D	L	D	A	L	E	E	V	L	K	R	.	.	.	E	R
Template Known Secondary structure										T	T								S	.	.	.	.	.	.	.	.	.											T	T											T	.	.	.	.	.	.	.	.	.	.	.	T														.	.	.
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.															.	.	.
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.										.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.												.	.	.	150	.	.	.	.	.	.	.	.	.	160				.	.
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P	Y	I	V	A	T	I	T	S	N	S	A	G	G	Q	P	V	S	L	A	N	L	K	A	M	Y	S	I	A	K	K	Y	D	I	P	V	V	M	D	S	A	R	F	A	E	N	A	Y	F	I	K	Q	R	E	A	E	Y	K	D	W	T	I	E	Q	I	T	R	E	T	Y	K	Y	A	D	M	L	A	M	S
Query Conservation
Alig confidence																																															.	.	.	.	.	.	.
Template Conservation																																															.	.	.	.	.	.	.
Template Sequence		P	R	F	L	Y	L	I	P	S	F	Q	N	P	T	G	G	L	T	P	L	P	A	R	K	R	L	L	Q	M	V	M	E	R	G	L	V	V	V	E	D	D	A	Y	R	E	.	.	.	.	.	.	.	L	Y	F	G	E	A	R	L	P	S	L	F	E	L	A	R	E	A	G	Y	P	G	V	I	Y	L	G	S
Template Known Secondary structure			S							B	S		T	T	T			B																	T								T	T	T	T	.	.	.	.	.	.	.		B		S	S														T
Template Predicted Secondary structure																																															.	.	.	.	.	.	.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.								.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	K	D	A	M	V	P	M	G	G	L	L	C	M	K	D	D	S	F	F	D	V	Y	T	E	C	R	T	L	C	V	V	Q	E	G	F	P	T	Y	G	G	L	E	G	G	A	M	E	R	L	A	V	G	L	Y	D	G	M	N	L	D	W	L	A	Y	R	I	A	Q	V	Q	Y	L	V	D	G	L	E	E
Query Conservation
Alig confidence																																	.	.	.	.	.
Template Conservation																																	.	.	.	.	.
Template Sequence		F	S	K	V	L	S	P	G	L	R	V	A	F	A	V	A	H	P	E	A	L	Q	K	L	V	Q	A	K	Q	G	A	.	.	.	.	.	D	L	H	T	P	M	L	N	Q	M	L	V	H	E	L	L	K	E	G	F	S	E	R	L	E	R	V	R	R	V	Y	R	E	K	A	Q	A	M	L	H	A	L	D	R
Template Known Secondary structure		S	T	T	T	T		S	T	T																							.	.	.	.	.		S	S														T	T	T
Template Predicted Secondary structure																																	.	.	.	.	.
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.						.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		348	.	350	.	.	.					.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure								.	.	.	.
Query SS confidence								.	.	.	.
Query Sequence		I	G	V	V	C	Q	.	.	.	.	Q	A	G	G	H	A	A	F	V	D	A	G	K	L	L	P	H	I	P	A	D	Q	F	P	A	Q	A	L	A	C	E	L	Y	K	V	A	G	I	R	A	V	E	I	G	S	F	L	L	G	R	D	P	K	T	G	K	Q	L	P	C	P	A	E	L	L	R	L	T	I	P
Query Conservation								.	.	.	.
Alig confidence								.	.	.	.															.	.	.	.	.	.	.	.														.																		.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.														.																		.	.	.	.	.	.	.	.	.
Template Sequence		E	V	P	K	E	V	R	Y	T	R	P	K	G	G	M	F	V	W	M	E	L	P	K	G	.	.	.	.	.	.	.	.	L	S	A	E	G	L	F	R	R	A	L	E	E	.	N	V	A	F	V	P	G	G	P	F	F	A	N	G	G	G	E	.	.	.	.	.	.	.	.	.	N	T	L	R	L	S	Y	A
Template Known Secondary structure			S		T	T	S						S	B	S	S								T	T	.	.	.	.	.	.	.	.													T	.	T						S	G	G	G		T	T	S			T	.	.	.	.	.	.	.	.	.	T							S
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.														.																		.	.	.	.	.	.	.	.	.
Template SS confidence
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.									.	.	.	.	.	340	.	.	.	.	.	.	.		.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.										.	.	.	.	.	370	.	.
		424	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	T	Y	T	Q	T	H	M	D	F	I	I	E	A	F	K	H	V	K	E	N	A	A	N	I
Query Conservation
Alig confidence			.	.
Template Conservation			.	.
Template Sequence		T	.	.	L	D	R	E	G	I	A	E	G	V	R	R	L	G	R	A	L	K	G	L	L	A	L
Template Known Secondary structure		S	.	.	S
Template Predicted Secondary structure			.	.
Template SS confidence
		373			.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions