Job Description P0A853 Confidence 99.94% Date Thu Jan 5 11:06:55 GMT 2012 Rank 76 Aligned Residues 330 % Identity 15% Template c3aemD_ PDB info PDB header:lyase Chain: D: PDB Molecule:methionine gamma-lyase; PDBTitle: reaction intermediate structure of entamoeba histolytica methionine2 gamma-lyase 1 containing michaelis complex and methionine imine-3 pyridoxamine-5'-phosphate Resolution 2.20 Å

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		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.			.	70	.	.	.	.	.			.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
Predicted Secondary structure																						.	.								.	.
Query SS confidence																						.	.								.	.
Query Sequence		D	L	L	T	D	S	G	T	G	A	V	T	Q	S	M	Q	A	A	M	M	.	.	R	G	D	E	A	Y	S	.	.	G	S	R	S	Y	Y	A	L	A	E	S	V	K	N	I	F	G	Y	Q	Y	T	I	P	T	H	Q	G	R	G	A	E	Q	I	Y	I	P	V	L	I	K	K	R	E	Q	E	K	G	L	D
Query Conservation																						.	.								.	.
Alig confidence																						.	.								.	.
Template Conservation
Template Sequence		I	F	Q	T	S	T	F	C	F	D	S	T	Q	Q	G	A	D	L	F	M	G	K	G	E	G	H	I	Y	S	R	L	G	N	P	T	V	E	Q	F	E	E	M	V	C	S	I	E	G	A	A	G	S	A	A	F	G	S	G	M	G	A	I	S	S	S	T	L	A	F	L	Q	K	G	D	H	L	I	A	G	D
Template Known Secondary structure						S	B				S	S									T	T		S	S			S	B	T	T	T																	T		S						S	S										T	T	T			T	T							S
Template Predicted Secondary structure
Template SS confidence
		1526	.	.	.	1530	.	.	.	.	.	.	.	.	.	1540	.	.	.	.	.	.	.	.	.	1550	.	.	.	.	.	.	.	.	.	1560	.	.	.	.	.	.	.	.	.	1570	.	.	.	.	.	.	.	.	.	1580	.	.	.	.	.	.	.	.	.	1590	.	.	.	.	.	.	.	.	.	1600	.	.	.	.	.
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	S	K	M	V	A	F	S	N	Y	F	F	D	T	T	Q	G	H	S	Q	I	N	G	C	T	V	R	N	V	Y	I	K	E	A	F	D	T	G	V	R	Y	D	F	K	G	N	F	D	L	E	G	L	E	R	G	I	E	E	V	G	P	N	N	V	P	Y	I	V	A	T	I	T	S	N	S	A	G	G	Q	P
Query Conservation
Alig confidence						.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.																.	.	.
Template Conservation						.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.																.	.	.
Template Sequence		T	L	Y	G	.	.	.	.	.	C	T	V	S	L	F	T	H	W	L	P	R	F	G	I	E	V	D	L	I	D	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	V	E	K	V	K	A	A	W	K	P	.	.	.	.	N	T	K	M	V	Y	L	E	S	P	A	N	P	T	C	.	.	.
Template Known Secondary structure		S				.	.	.	.	.													T	T								T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S										T	.	.	.	.	T								S	S		T	T	T		.	.	.
Template Predicted Secondary structure						.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.																.	.	.
Template SS confidence
		1606	.	.	.						1610	.	.	.	.	.	.	.	.	.	1620	.	.	.	.	.	.	.	.	.	1630	.	.																.	.	.	.	.	.	.	1640	.	.	.					.	.	.	.	.	.	1650	.	.	.	.	.	.	.	.
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.				.	.	.	280	.
Predicted Secondary structure																																																																										.	.	.
Query SS confidence																																																																										.	.	.
Query Sequence		V	S	L	A	N	L	K	A	M	Y	S	I	A	K	K	Y	D	I	P	V	V	M	D	S	A	R	F	A	E	N	A	Y	F	I	K	Q	R	E	A	E	Y	K	D	W	T	I	E	Q	I	T	R	E	T	Y	K	Y	A	D	M	L	A	M	S	A	K	K	D	A	M	V	P	M	.	.	.	G	G	L	L	C
Query Conservation																																																																										.	.	.
Alig confidence		.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.
Template Conservation		.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	K	V	S	D	I	K	G	I	A	V	V	C	H	E	R	G	A	R	L	V	V	D	A	T	F	T	S	P	C	F	L	K	P	L	E	L	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	I	A	L	H	S	V	S	K	Y	I	N	G	H	G	D	V	I	G	G	V	S	S
Template Known Secondary structure		.																T								T	T	T		T	T	T			G	G	G	G	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S						T	T	T	T	T	T		S	S	S
Template Predicted Secondary structure		.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
			1659	1660	.	.	.	.	.	.	.	.	.	1670	.	.	.	.	.	.	.	.	.	1680	.	.	.	.	.	.	.	.	.	1690	.	.	.	.	.	.																			.	.	.	1700	.	.	.	.	.	.	.	.	.	1710	.	.	.	.	.	.	.	.	.
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.								.	.	.
Predicted Secondary structure																																																																								.	.	.	.	.	.	.
Query SS confidence																																																																								.	.	.	.	.	.	.
Query Sequence		M	K	D	D	S	F	F	D	V	Y	T	E	C	R	T	L	C	V	V	Q	E	G	F	P	T	Y	G	G	L	E	G	G	A	M	E	R	L	A	V	G	L	Y	D	G	M	N	L	D	W	L	A	Y	R	I	A	Q	V	Q	Y	L	V	D	G	L	E	E	I	G	V	V	.	.	.	.	.	.	.	C	Q	Q
Query Conservation																																																																								.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.																					.	.																									.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.																					.	.
Template Sequence		A	K	T	A	E	D	I	A	T	I	K	F	Y	R	K	D	.	.	.	.	.	.	.	.	A	G	S	L	M	A	P	M	D	A	F	L	C	A	R	G	M	K	T	L	.	.	P	I	R	M	Q	I	H	M	E	N	G	L	K	V	A	K	F	L	E	Q	H	E	K	I	V	K	V	N	H	P	G	L	E	S
Template Known Secondary structure			S	S														.	.	.	.	.	.	.	.																		T	T		.	.																				T		T	T							T	T	S	T	T
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.																					.	.
Template SS confidence
		1720	.	.	.	.	.	.	.	.	.	1730	.	.	.	.	.									.	.	.	.	1740	.	.	.	.	.	.	.	.	.	1750	.	.	.	.	.			.	.	.	.	1760	.	.	.	.	.	.	.	.	.	1770	.	.	.	.	.	.	.	.	.	1780	.	.	.	.	.	.	.	.	.
		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.																			.	.	.
Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	G	G	H	A	A	F	V	D	A	G	K	L	L	P	H	I	P	A	D	Q	F	P	A	Q	A	L	A	C	E	L	Y	K	V	A	G	I	R	A	V	E	I	G	S	F	L	L	G	R	D	P	K	T	G	K	Q	L	P	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	A	E
Query Conservation																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																			.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.
Template Sequence		F	P	G	H	D	I	A	K	K	Q	M	T	G	Y	G	S	T	F	L	F	E	M	K	S	F	E	A	A	K	K	L	M	E	.	.	.	.	.	H	L	K	V	C	T	L	A	V	S	L	G	C	V	D	T	L	I	E	H	P	A	S	M	T	H	A	A	V	P	E	N	I	M	R	K	Q	G	I	T	P	E
Template Known Secondary structure		S	T	T									S	S			S							S	S									T	.	.	.	.	.	S		S	S	S				S					S	S						T	T	T	T	T	T	T	T	S									T			T	T
Template Predicted Secondary structure																																			.	.	.	.	.
Template SS confidence
		1790	.	.	.	.	.	.	.	.	.	1800	.	.	.	.	.	.	.	.	.	1810	.	.	.	.	.	.	.	.	.	1820	.	.						.	.	.	.	.	.	.	1830	.	.	.	.	.	.	.	.	.	1840	.	.	.	.	.	.	.	.	.	1850	.	.	.	.	.	.	.	.	.	1860	.	.	.	.
		417	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	R	L	T	I	P	R	A	T	Y	T	Q	T	H	M	D	F	I	I	E	A	F	K
Query Conservation
Alig confidence												.
Template Conservation												.
Template Sequence		L	V	R	I	S	V	G	I	E	N	.	V	D	D	I	I	A	D	L	K	Q	A	L	E
Template Known Secondary structure									S	S		.
Template Predicted Secondary structure												.
Template SS confidence
		1865	.	.	.	.	1870	.	.	.	.		.	.	.	.	.	1880	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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