Job Description P0A853 Confidence 99.96% Date Thu Jan 5 11:06:55 GMT 2012 Rank 60 Aligned Residues 338 % Identity 15% Template c3a2bA_ PDB info PDB header:transferase Chain: A: PDB Molecule:serine palmitoyltransferase; PDBTitle: crystal structure of serine palmitoyltransferase from sphingobacterium2 multivorum with substrate l-serine Resolution 2.30 Å

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		44	.	.	.	.	.	50	.	.	.	.	.	.	.		.	.	60	.	.	.	.	.	.	.	.		.	70	.	.											.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure																.												.					.	.	.	.	.	.	.	.	.	.
Query SS confidence																.												.					.	.	.	.	.	.	.	.	.	.
Query Sequence		E	D	V	F	I	D	L	L	T	D	S	G	T	G	.	A	V	T	Q	S	M	Q	A	A	M	M	.	R	G	D	E	.	.	.	.	.	.	.	.	.	.	A	Y	S	G	S	R	S	Y	Y	A	L	A	E	S	V	K	N	I	F	G	Y	Q	Y	T	I	P	T	H	Q	G	R	G	A	E	Q	I	Y	I	P
Query Conservation																.												.					.	.	.	.	.	.	.	.	.	.
Alig confidence																.												.					.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	R	R	V	L	M	F	G	S	N	S	Y	L	G	L	T	T	D	T	R	I	I	K	A	A	Q	D	A	L	E	K	Y	G	T	G	C	A	G	S	R	F	L	N	G	T	L	D	I	H	V	E	L	E	E	K	L	S	A	Y	V	G	K	E	A	A	I	L	F	S	T	G	F	Q	S	N	L	G	P	L	S
Template Known Secondary structure		T							S		S		T	T		G	G	G																	S				S	B	T	T	T	T																		T		S						S	S
Template Predicted Secondary structure
Template SS confidence
		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	I	K	K	R	E	Q	E	K	G	L	D	R	S	K	M	V	A	F	S	N	Y	F	F	D	T	T	Q	G	H	S	Q	I	N	G	C	T	V	R	N	V	Y	I	K	E	A	F	D	T	G	V	R	Y	D	F	K	G	N	F	D	L	E	G	L	E	R	G	I	E	E	V	G	P	N	N	V	P	Y	I
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		C	L	M	G	R	N	D	Y	I	L	L	D	E	R	D	H	A	.	.	.	.	.	.	.	.	.	S	I	I	D	G	S	R	L	S	F	S	K	V	I	K	Y	G	H	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	M	E	D	L	R	A	K	L	S	R	L	P	E	D	S	A	K	L	I
Template Known Secondary structure			S	S		T	T							T	T				.	.	.	.	.	.	.	.	.									S	S	S							T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											T	S		S	S	S
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.										140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.																.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	T	I	T	S	N	S	A	G	G	Q	P	V	S	L	A	N	L	K	A	M	Y	S	I	A	K	K	Y	D	I	P	V	V	M	D	S	A	R	F	A	E	N	A	Y	F	I	K	Q	R	E	A	E	Y	K	D	W	T	I	E	Q	I	T	R	E	T	Y	K	Y	A	D	M	L	A	M	S	A	K	K	D
Query Conservation
Alig confidence												.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.
Template Sequence		C	T	D	G	I	F	S	M	E	G	.	.	.	.	D	I	V	N	L	P	E	L	T	S	I	A	N	E	F	D	A	A	V	M	V	D	D	A	H	S	L	.	.	.	.	.	.	.	.	.	.	.	G	V	I	G	H	K	G	A	G	T	A	S	H	F	G	L	N	D	D	V	D	L	I	M	G	T	F	S
Template Known Secondary structure					S	B		T	T	T		.	.	.	.		B														T								T	T	T	T	.	.	.	.	.	.	.	.	.	.	.	T	T	S	S	G	G	G								T		G	G	G		S						S	S
Template Predicted Secondary structure												.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		179	180	.	.	.	.	.	.	.	.					.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.												.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	M	V	P	M	G	G	L	L	C	M	K	D	D	S	F	F	D	V	Y	T	E	C	R	T	L	C	V	V	Q	E	G	F	P	T	Y	G	G	L	E	G	G	A	M	E	R	L	A	V	G	L	Y	D	G	M	N	L	D	W	L	A	Y	R	I	A	Q	V	Q	Y	L	V	D	G	L	E	E	I	G	V	V
Query Conservation
Alig confidence																													.	.	.	.	.
Template Conservation																													.	.	.	.	.
Template Sequence		K	S	L	A	S	L	G	G	F	V	A	G	D	A	D	V	I	D	F	L	K	H	N	A	R	S	V	.	.	.	.	.	M	F	S	A	S	M	T	P	A	S	V	A	S	T	L	K	A	L	E	I	I	Q	N	E	P	E	H	I	E	K	L	W	K	N	T	D	Y	A	K	A	Q	L	L	D	H	G	F	D
Template Known Secondary structure		S	T	T		S	S																						.	.	.	.	.		S	S	B																					T																				T	T
Template Predicted Secondary structure																													.	.	.	.	.
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270						.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	Q	Q	A	G	G	H	A	A	F	V	D	A	G	K	L	L	P	H	I	P	A	D	Q	F	P	A	Q	A	L	A	C	E	L	Y	K	V	A	G	I	R	A	V	E	I	G	S	F	L	L	G	R	D	P	K	T	G	K	Q	L	P	C	P	A	E	L	L	R	L	T	I	P	R	A	T	Y	T	Q	T	H
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.															.						.	.	.	.	.	.	.	.	.	.																		.
Template Conservation																	.	.	.	.	.	.	.	.															.						.	.	.	.	.	.	.	.	.	.																		.
Template Sequence		L	G	A	T	E	S	P	I	L	P	I	F	I	R	S	.	.	.	.	.	.	.	.	N	E	K	T	F	W	V	T	K	M	L	Q	D	D	.	G	V	F	V	N	.	.	.	.	.	.	.	.	.	.	P	V	V	S	P	A	V	P	A	E	E	S	L	I	R	F	S	.	L	M	A	T	H	T	Y	D	Q
Template Known Secondary structure		B		S			S	S									.	.	.	.	.	.	.	.														T	.	T					.	.	.	.	.	.	.	.	.	.				T	T	T	S		G	G	G							.			T	T
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.															.						.	.	.	.	.	.	.	.	.	.																		.
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.									.	.	.	.	.	.	340	.	.	.	.	.	.	.		.	.	350	.	.											.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.		370	.	.	.	.	.	.	.	.
		432	.	.	.	.	.	.	.	440	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	D	F	I	I	E	A	F	K	H	V	K	E	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	D	E	A	I	E	K	M	V	K	V	F	K	Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		379	380	.	.	.	.	.	.	.	.	.	390	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions