Job Description P0A853 Confidence 99.78% Date Thu Jan 5 11:06:55 GMT 2012 Rank 211 Aligned Residues 315 % Identity 11% Template c2x5fB_ PDB info PDB header:transferase Chain: B: PDB Molecule:aspartate_tyrosine_phenylalanine pyridoxal-5' PDBTitle: crystal structure of the methicillin-resistant2 staphylococcus aureus sar2028, an3 aspartate_tyrosine_phenylalanine pyridoxal-5'-phosphate4 dependent aminotransferase Resolution 1.80 Å

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		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.											.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	S	G	S	R	S	Y	Y	A	L	A	E	S	V	K	N	I	F	.	.	.	.	.	.	.	.	.	.	G	Y	Q	Y	T	I	P	T	H	Q	G	R	G	A	E	Q	I	Y	I	P	V	L	I	K	K	R	E	Q	E	K	G	L	D	R	S	K	M	V	A	F	S	N	Y	F	F	D	T	T	Q	G	H	S
Query Conservation																				.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.
Template Conservation																																																																	.	.	.	.	.	.	.	.
Template Sequence		Y	A	P	P	Q	G	I	E	E	L	R	D	L	W	Q	Q	K	M	L	R	D	N	P	E	L	S	I	D	N	M	S	R	P	I	V	T	N	A	L	T	H	G	L	S	L	V	G	D	L	F	V	N	Q	D	D	T	I	L	L	P	E	H	N	.	.	.	.	.	.	.	.	W	G	N	Y	K	L	V	F	N
Template Known Secondary structure					T	T																		T	T			G	G	G	B							S																T	T							S	S		.	.	.	.	.	.	.	.		T							T
Template Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.									.	.	.	.	.	150	.	.	.
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																														.	.	.	.
Query SS confidence																																																																														.	.	.	.
Query Sequence		Q	I	N	G	C	T	V	R	N	V	Y	I	K	E	A	F	D	T	G	V	R	Y	D	F	K	G	N	F	D	L	E	G	L	E	R	G	I	E	E	V	G	P	N	N	V	P	Y	I	V	A	T	I	T	S	N	S	A	G	G	Q	P	V	S	L	A	N	L	K	A	M	Y	S	I	A	K	K	.	.	.	.
Query Conservation																																																																														.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.																		.																.																			.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.																		.																.
Template Sequence		T	R	N	G	A	N	L	Q	T	Y	P	I	F	D	K	.	.	.	.	.	.	.	.	.	D	G	H	Y	T	T	D	S	L	V	E	A	L	Q	S	Y	N	.	K	D	K	V	I	M	I	L	N	Y	P	N	N	P	T	.	G	Y	T	P	T	H	K	E	V	T	T	I	V	E	A	I	K	A	L	A	N	K
Template Known Secondary structure		T	T	T										B		T	.	.	.	.	.	.	.	.	.	T	S		B		S												.	S	S								S	S		T	T	T	.																						T
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.																		.																.
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.										.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.		.	.	.	.	190	.	.	.	.	.	.	.	.	.	200		.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
			220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.						.	.	.	.	.	.	.	270	.	.	.	.	.	.			.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure		.																																												.	.	.	.	.															.	.
Query SS confidence		.																																												.	.	.	.	.															.	.
Query Sequence		.	Y	D	I	P	V	V	M	D	S	A	R	F	A	E	N	A	Y	F	I	K	Q	R	E	A	E	Y	K	D	W	T	I	E	Q	I	T	R	E	T	Y	K	Y	A	D	.	.	.	.	.	M	L	A	M	S	A	K	K	D	A	M	V	P	M	.	.	G	G	L	L	C	M	K	D	D	S	F	F	D	V	Y
Query Conservation		.																																												.	.	.	.	.															.	.
Alig confidence		.													.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.															.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.
Template Sequence		G	T	K	V	I	A	V	V	D	D	A	Y	Y	.	.	.	.	.	.	.	.	.	.	G	L	F	Y	E	D	V	Y	T	Q	S	L	F	T	A	L	T	N	L	H	S	N	A	I	L	P	I	R	L	D	G	A	T	K	E	F	F	A	W	G	F	R	V	G	F	M	T	F	G	T	S	D	Q	T	T	K	E
Template Known Secondary structure		T										T	T	T	.	.	.	.	.	.	.	.	.	.	T		B		S	S				S								T	T			T	T													T	T		G	G	G								B
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.
Template SS confidence
		223	.	.	.	.	.	.	230	.	.	.	.	.											.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.								.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.		.	.	.	.	360	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.																																			.
Query SS confidence																																.	.	.	.	.	.	.																																			.
Query Sequence		T	E	C	R	T	L	C	V	V	Q	E	G	F	P	T	Y	G	G	L	E	G	G	A	M	E	R	L	A	V	G	.	.	.	.	.	.	.	L	Y	D	G	M	N	L	D	W	L	A	Y	R	I	A	Q	V	Q	Y	L	V	D	G	L	E	E	I	G	V	V	C	Q	Q	A	.	G	G	H	A	A	F	V	D
Query Conservation																																.	.	.	.	.	.	.																																			.
Alig confidence																																.	.	.	.	.	.	.																																			.
Template Conservation
Template Sequence		V	L	E	A	K	V	K	G	L	I	R	S	N	I	S	S	G	P	L	P	T	Q	S	A	V	K	H	V	L	K	N	N	K	Q	F	D	K	E	I	E	Q	N	I	Q	T	L	K	E	R	Y	E	V	T	K	E	V	V	Y	A	D	Q	Y	H	S	H	W	Q	A	Y	D	F	N	S	G	Y	F	M	A	I	K
Template Known Secondary structure													T	T	T	S	S													T	T	T																											T		G	G	G	T	T	T								B	S	S
Template Predicted Secondary structure
Template SS confidence
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	K	L	L	P	H	I	P	A	D	Q	F	P	A	Q	A	L	A	C	E	L	Y	K	V	A	G	I	R	A	V	E	I	G	S	F	L	L	G	R	D	P	K	T	G	K	Q	L	P	C	P	A	E	L	L	R	L	T	I	P	R	A	T	Y	T	Q	T	H	M	D	F	I	I	E	A	F	K	H	V	K
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.
Template Conservation					.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.
Template Sequence		V	H	D	.	.	.	.	.	.	.	.	.	V	D	P	E	A	L	R	K	H	L	I	D	K	Y	S	I	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	I	A	L	N	A	T	D	I	R	I	A	.	.	F	S	C	V	E	K	D	D	I	P	H	V	F	D	S	I	A	K	A	I
Template Known Secondary structure			S	S	.	.	.	.	.	.	.	.	.	S													T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S	S	S						.	.	G	G	G	S		G	G	G
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.
Template SS confidence
		373	.	.										.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.																		.	.	.	.	.	.	.	400	.	.	.	.			.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.
		444	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		425	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions