Job Description P0A853 Confidence 99.86% Date Thu Jan 5 11:06:55 GMT 2012 Rank 170 Aligned Residues 346 % Identity 16% Template c2x5dD_ PDB info PDB header:transferase Chain: D: PDB Molecule:probable aminotransferase; PDBTitle: crystal structure of a probable aminotransferase from2 pseudomonas aeruginosa Resolution 2.25 Å

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		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.						.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.										.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.																									.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.																									.	.	.	.	.	.	.	.	.
Query Sequence		E	D	V	F	I	D	L	L	T	D	S	G	T	G	A	V	T	Q	S	M	Q	A	A	M	M	.	.	.	.	.	R	G	D	E	A	Y	S	G	S	R	S	Y	Y	A	L	A	E	S	V	K	N	I	F	G	.	.	.	.	.	.	.	.	.	Y	Q	Y	T	I	P	T	H	Q	G	R	G	A	E	Q	I	Y
Query Conservation																											.	.	.	.	.																									.	.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.																									.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	E	D	I	I	D	L	S	M	G	N	P	D	G	P	T	P	P	H	I	V	E	K	L	C	T	V	A	Q	R	E	D	T	H	G	Y	S	T	S	R	G	I	P	R	L	R	R	A	I	S	H	W	Y	R	D	R	Y	D	V	Q	I	D	P	E	S	E	A	I	V	T	I	G	S	K	E	G	L	A	H	L
Template Known Secondary structure		T							S						S																S	T	T			S				T	T																							T	T	T	S					S	S
Template Predicted Secondary structure
Template SS confidence
		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	P	V	L	I	K	K	R	E	Q	E	K	G	L	D	R	S	K	M	V	A	F	S	N	Y	F	F	D	T	T	Q	G	H	S	Q	I	N	G	C	T	V	R	N	V	Y	I	K	E	A	F	D	T	G	V	R	Y	D	F	K	G	N	F	D	L	E	G	L	E	R	G	I	E	E	V	G	P	N	N	V	P
Query Conservation
Alig confidence																		.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.																	.
Template Conservation																		.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.																	.
Template Sequence		M	L	A	T	L	D	H	G	D	T	I	L	V	P	N	P	.	.	.	.	.	.	.	.	.	S	Y	P	I	H	I	Y	G	A	V	I	A	G	A	Q	V	R	S	V	P	L	V	P	.	.	.	.	.	.	.	.	.	.	.	G	I	D	F	F	N	E	L	E	R	A	I	R	E	S	I	.	P	K	P	R
Template Known Secondary structure								T	T								S	.	.	.	.	.	.	.	.	.			T									T	T									S	T	.	.	.	.	.	.	.	.	.	.	.	T	S												T	S	S	.	S			S
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.																	.
Template SS confidence
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130										.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.												.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.		170	.	.	.
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	I	V	A	T	I	T	S	N	S	A	G	G	Q	P	V	S	L	A	N	L	K	A	M	Y	S	I	A	K	K	Y	D	I	P	V	V	M	D	S	A	R	F	A	E	N	A	Y	F	I	K	Q	R	E	A	E	Y	K	D	W	T	I	E	Q	I	T	R	E	T	Y	K	Y	A	D	M	L	A	M	S	A	K
Query Conservation
Alig confidence													.																																.	.	.	.	.	.	.
Template Conservation													.																																.	.	.	.	.	.	.
Template Sequence		M	M	I	L	G	F	P	S	N	P	T	.	A	Q	C	V	E	L	D	F	F	E	R	V	V	A	L	A	K	Q	Y	D	V	M	V	V	H	D	L	A	Y	A	D	.	.	.	.	.	.	.	I	V	Y	D	G	W	K	A	P	S	I	M	Q	V	P	G	A	K	D	I	A	V	E	F	F	T	L	S	K	S
Template Known Secondary structure							S	S		T	T	T	.																				T								T	T	T	T	.	.	.	.	.	.	.		B		T	T						G	G	G	S	T	T	G	G	G	T							S	T	T	T
Template Predicted Secondary structure													.																																.	.	.	.	.	.	.
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.		.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.								.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.			.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure																																																												.	.
Query SS confidence																																																												.	.
Query Sequence		K	D	A	M	V	P	M	G	G	L	L	C	M	K	D	D	S	F	F	D	V	Y	T	E	C	R	T	L	C	V	V	Q	E	G	F	P	T	Y	G	G	L	E	G	G	A	M	E	R	L	A	V	G	L	Y	D	G	M	N	.	.	L	D	W	L	A	Y	R	I	A	Q	V	Q	Y	L	V	D	G	L	E	E
Query Conservation																																																												.	.
Alig confidence																													.	.	.	.	.	.	.	.	.																							.	.
Template Conservation																													.	.	.	.	.	.	.	.	.
Template Sequence		Y	N	M	A	G	W	R	I	G	F	M	V	G	N	P	E	L	V	S	A	L	A	R	I	K	S	Y	.	.	.	.	.	.	.	.	.	H	D	Y	G	T	F	T	P	L	Q	V	A	A	I	A	A	L	E	G	D	Q	Q	C	V	R	D	I	A	R	Q	Y	Q	Q	R	R	D	V	L	V	K	G	L	R	E
Template Known Secondary structure		T	T			S																						T	.	.	.	.	.	.	.	.	.	T		S	S	S													S	S
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.										.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		348	.	350	.	.	.	.	.		.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.
Predicted Secondary structure										.
Query SS confidence										.
Query Sequence		I	G	V	V	C	Q	Q	A	.	G	G	H	A	A	F	V	D	A	G	K	L	L	P	H	I	P	A	D	Q	F	P	A	Q	A	L	A	C	E	L	Y	K	V	A	G	I	R	A	V	E	I	G	S	F	L	L	G	R	D	P	K	T	G	K	Q	L	P	C	P	A	E	L	L	R	L	T	I	P	R	A	T
Query Conservation										.
Alig confidence										.													.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.															.	.
Template Conservation																							.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.															.	.
Template Sequence		A	G	W	M	V	E	N	P	K	A	S	M	Y	V	W	A	K	I	P	E	P	.	.	.	.	.	Y	A	H	L	G	S	L	E	F	A	K	K	L	L	Q	D	A	K	V	S	V	S	P	G	I	G	F	.	.	.	.	.	.	.	.	.	.	.	G	D	Y	G	D	D	H	V	R	F	A	L	I	E	.	.
Template Known Secondary structure		T	T							S	B	S	S										.	.	.	.	.			T	T																				G	G	G	G	.	.	.	.	.	.	.	.	.	.	.		G	G	G	T	T								S	.	.
Template Predicted Secondary structure																							.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.															.	.
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.						.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.												.	.	.	.	.	370	.	.	.	.	.	.	.	.
		427	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	T	Q	T	H	M	D	F	I	I	E	A	F	K	H	V	K	E	N	A
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	N	R	D	R	L	R	Q	A	V	R	G	I	K	A	M	F	R	A	D
Template Known Secondary structure		.																			T
Template Predicted Secondary structure		.
Template SS confidence
			379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions