Job Description P0A853 Confidence 99.95% Date Thu Jan 5 11:06:55 GMT 2012 Rank 73 Aligned Residues 345 % Identity 16% Template c2r0tA_ PDB info PDB header:transferase Chain: A: PDB Molecule:pyridoxamine 5-phosphate-dependent dehydrase; PDBTitle: crystal sructure of gdp-4-keto-6-deoxymannose-3-dehydratase2 with a trapped plp-glutamate geminal diamine Resolution 1.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		48	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.								.	.	.	.	.	120
Predicted Secondary structure																																																																					.	.	.	.	.	.	.
Query SS confidence																																																																					.	.	.	.	.	.	.
Query Sequence		I	D	L	L	T	D	S	G	T	G	A	V	T	Q	S	M	Q	A	A	M	M	R	G	D	E	A	Y	S	G	S	R	S	Y	Y	A	L	A	E	S	V	K	N	I	F	G	Y	Q	Y	T	I	P	T	H	Q	G	R	G	A	E	Q	I	Y	I	P	V	L	I	.	.	.	.	.	.	.	K	K	R	E	Q	E
Query Conservation																																																																					.	.	.	.	.	.	.
Alig confidence																									.	.																																											.	.	.	.	.	.	.
Template Conservation																									.	.
Template Sequence		Y	P	L	A	S	S	T	W	D	D	L	E	Y	K	A	I	Q	S	V	L	D	S	K	.	.	M	F	T	M	G	E	Y	V	K	Q	Y	E	T	Q	F	A	K	T	F	G	S	K	Y	A	V	M	V	S	S	G	S	T	A	N	L	L	M	I	A	A	L	F	F	T	K	K	P	R	L	K	K	G	D	E	I
Template Known Secondary structure		B		S																				T	.	.			B	S																T		S						S													T	T	S	S	S	S		S			T	T
Template Predicted Secondary structure																									.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.			.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure
Query SS confidence
Query Sequence		K	G	L	D	R	S	K	M	V	A	F	S	N	Y	F	F	D	T	T	Q	G	H	S	Q	I	N	G	C	T	V	R	N	V	Y	I	K	E	A	F	D	T	G	V	R	Y	D	F	K	G	N	F	D	L	E	G	L	E	R	G	I	E	E	V	G	P	N	N	V	P	Y	I	V	A	T	I	T	S	N	S	A
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.																.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.																.	.	.	.
Template Sequence		I	V	P	A	V	S	W	S	.	.	.	.	.	.	.	.	.	T	T	Y	Y	P	L	Q	Q	Y	G	L	R	V	K	F	V	D	I	D	I	N	.	.	.	.	.	.	.	.	.	T	L	N	I	D	I	E	S	L	K	E	A	V	T	D	.	.	.	.	S	T	K	A	I	L	T	V	N	L	L	G	N	P
Template Known Secondary structure					S		S			.	.	.	.	.	.	.	.	.									T	T								B		T	T	.	.	.	.	.	.	.	.	.	T		S	B											S	.	.	.	.	S									B	T	T	B
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.																.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.										90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110										.	.	.	.	.	.	.	.	.	120	.	.	.	.	.					.	.	.	.	130	.	.	.	.	.	.	.	.	.
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	Q	P	V	S	L	A	N	L	K	A	M	Y	S	I	A	K	K	Y	D	I	P	V	V	M	D	S	A	R	F	A	E	N	A	Y	F	I	K	Q	R	E	A	E	Y	K	D	W	T	I	E	Q	I	T	R	E	T	Y	K	Y	A	D	M	L	A	M	S	A	K	K	D	A	M	V	P	M	G	G	L	L
Query Conservation
Alig confidence			.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	.	.	.	.	.	.	.	N	F	D	E	I	N	K	I	I	G	G	R	D	I	I	L	L	E	D	N	C	E	S	M	G	A	T	F	N	N	K	C	A	G	T	F	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	G	T	F	S	S	F	Y	S	K	H	I	A	T	M	E	G	G	C	I
Template Known Secondary structure			.	.	.	.	.	.	.										T	T	S	S								T	T		T	T				T	T			T	T	S	S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	T	S	S	S		S	S	S
Template Predicted Secondary structure			.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		140								.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.															.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.																					.	.	.	.	.	320	.	.	.	.	.	.	.		.	.	330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.
Query Sequence		C	M	K	D	D	S	F	F	D	V	Y	T	E	C	R	T	L	C	V	V	Q	E	G	F	P	T	Y	G	G	L	E	G	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	E	R	L	A	V	G	L	Y	D	G	M	N	.	L	D	W	L	A	Y	R	I	A	Q	V	Q
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.
Template Conservation
Template Sequence		V	T	D	D	E	E	I	Y	H	I	L	L	C	I	R	A	H	G	W	T	R	N	L	P	K	K	N	K	V	T	G	V	K	S	D	D	Q	F	E	E	S	F	K	F	V	L	P	G	Y	N	V	R	P	L	E	M	S	G	A	I	G	I	E	Q	L	K	K	L	P	R	F	I	S	V	R	R	K	N	A	E
Template Known Secondary structure				S												T	B	T	T	B	S	T	T	S		S	B		S	S	S	S	B			S						T	T		B		S				B				B
Template Predicted Secondary structure
Template SS confidence
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		Y	L	V	D	G	L	E	E	I	G	V	V	C	Q	Q	A	G	G	H	A	A	F	V	D	A	G	K	L	L	P	H	I	P	A	D	Q	F	P	A	Q	A	L	A	C	E	L	Y	K	V	A	G	I	R	A	V	E	I	G	S	F	L	L	G	R	D	P	K	T	G	K	Q	L	P	C	P	A	E	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence																													.																			.																															.	.	.
Template Conservation																													.																			.
Template Sequence		Y	F	L	D	K	F	K	D	H	P	Y	L	D	V	Q	Q	E	T	G	E	S	S	W	F	G	F	S	.	F	I	I	K	K	D	S	G	V	I	R	K	Q	L	V	E	N	L	.	N	S	A	G	I	E	C	R	P	I	V	T	G	N	F	L	K	N	T	D	V	L	K	Y	F	D	Y	T	V	H	N	N	V
Template Known Secondary structure								T	T		S	S								S	B								.					T	T	S												.			T	T	B			B		S	T	T	S		G	G	G						T	T							S
Template Predicted Secondary structure																													.																			.
Template SS confidence
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.		.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.		.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
											417	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440
Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	L	L	R	L	T	I	P	R	A	T	Y	T	Q	T	H	M	D	F	I	I	E	A	F	K
Query Conservation		.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.							.
Template Conservation																	.
Template Sequence		D	N	A	E	Y	L	D	K	N	G	L	F	V	G	N	.	H	Q	I	E	L	F	D	E	I	D	Y	L	R	E	V	L	K
Template Known Secondary structure																	.		S	S													T
Template Predicted Secondary structure																	.
Template SS confidence
		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.		.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions