Job Description P0A853 Confidence 99.89% Date Thu Jan 5 11:06:55 GMT 2012 Rank 132 Aligned Residues 316 % Identity 14% Template c2qmaB_ PDB info PDB header:transferase Chain: B: PDB Molecule:diaminobutyrate-pyruvate transaminase and l-2,4- PDBTitle: crystal structure of glutamate decarboxylase domain of2 diaminobutyrate-pyruvate transaminase and l-2,4-diaminobutyrate3 decarboxylase from vibrio parahaemolyticus Resolution 1.81 Å

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		73	.	.	.	.	.	.	80	.	.	.	.					.	.	.	.	.	90	.	.	.	.				.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.												.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure														.	.	.	.											.	.	.																						.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.											.	.	.																						.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	Y	S	G	S	R	S	Y	Y	A	L	A	.	.	.	.	E	S	V	K	N	I	F	G	Y	Q	.	.	.	Y	T	I	P	T	H	Q	G	R	G	A	E	Q	I	Y	I	P	V	L	I	K	.	.	.	.	.	.	.	.	.	.	.	K	R	E	Q	E	K	G	L	D	R	S	K	M	V	A	F	S	N	Y
Query Conservation														.	.	.	.											.	.	.																						.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.											.	.	.																						.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	W	D	Q	A	S	S	A	T	Y	V	E	Q	K	V	V	N	W	L	C	D	K	Y	D	L	S	E	K	A	D	G	I	F	T	S	G	G	T	Q	S	N	Q	X	G	L	X	L	A	R	D	W	I	A	D	K	L	S	G	H	S	I	Q	K	L	G	L	P	D	Y	A	D	K	L	R	I	V	C	S	K	K
Template Known Secondary structure			G	G	G																			T	T			T	T							S	S																														S		T	T	G	G	G							T	T
Template Predicted Secondary structure
Template SS confidence
		592	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.
		135	.	.	.	.	140	.	.	.	.	.	.	.	.				.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure																.	.	.
Query SS confidence																.	.	.
Query Sequence		F	F	D	T	T	Q	G	H	S	Q	I	N	G	C	.	.	.	T	V	R	N	V	Y	I	K	E	A	F	D	T	G	V	R	Y	D	F	K	G	N	F	D	L	E	G	L	E	R	G	I	E	E	V	G	P	N	N	V	P	Y	I	V	A	T	I	T	S	N	S	A	G	G	Q	P	V	S	L	A	N	L	K
Query Conservation																.	.	.
Alig confidence																.	.	.										.	.	.	.	.	.	.	.	.	.																																									.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.																																									.	.
Template Sequence		S	H	F	T	V	Q	K	S	A	S	W	X	G	L	G	E	K	A	V	X	T	V	D	A	N	A	.	.	.	.	.	.	.	.	.	.	D	G	T	X	D	I	T	K	L	D	E	V	I	A	Q	A	K	A	E	G	L	I	P	F	A	I	V	G	T	A	G	T	T	D	H	G	A	I	D	D	.	.	L	D
Template Known Secondary structure		S		T									T	T	S		G	G	G						B		T	.	.	.	.	.	.	.	.	.	.	T	S		B															T	T										B	S		T	T	T			B			.	.
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.																																									.	.
Template SS confidence
		672	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.											.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.			.	.
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.		.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure																																																																				.
Query SS confidence																																																																				.
Query Sequence		A	M	Y	S	I	A	K	K	Y	D	I	P	V	V	M	D	S	A	R	F	A	E	N	A	Y	F	I	K	Q	R	E	A	E	Y	K	D	W	T	I	E	Q	I	T	R	E	T	Y	K	Y	A	D	M	L	A	M	S	A	K	K	D	A	M	V	P	M	G	.	G	L	L	C	M	K	D	D	S	F	F	D	V
Query Conservation																																																																				.
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.																							.													.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.																																				.
Template Sequence		F	I	A	D	X	A	V	K	H	D	X	W	X	H	V	D	G	A	Y	G	G	A	L	I	L	S	S	H	K	S	R	L	.	.	.	.	.	.	.	.	.	.	.	.	K	G	V	E	R	A	H	S	I	S	V	D	F	H	K	L	F	Y	Q	T	I	S	C	G	A	L	L	V	N	D	K	S	N	F	K	.
Template Known Secondary structure											T								T	T	G	G	G	G	G	G	S	T	T	G	G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	T	T	G	G	G		S						T	T	S	T	T				S	S							S		G	G	G	G	G	.
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.																																				.
Template SS confidence
		740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.													.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350			.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																														.	.
Query SS confidence																																																														.	.
Query Sequence		Y	T	E	C	R	T	L	C	V	V	Q	E	G	F	P	T	Y	G	G	L	E	G	G	A	M	E	R	L	A	V	G	L	Y	D	G	M	N	L	D	W	L	A	Y	R	I	A	Q	V	Q	Y	L	V	D	G	L	E	E	I	G	V	.	.	V	C	Q	Q	A	G	G	H	A	A	F	V	D	A	G	K	L	L
Query Conservation																																																														.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																															.	.														.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																														.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	L	L	K	R	F	D	A	L	K	V	F	X	T	X	Q	N	V	G	P	K	A	L	G	D	X	Y	D	H	L	L	A	Q	T	L	E	V	A	D	X	I	R	T	N	D	Q	F	E	L	L	A	E	P	S	L	S	T	V	L	F	R	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G					T											T																									T		T	T					S			S	S	S						.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																														.	.	.	.	.
Template SS confidence
																807	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.
		369	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410		.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.
Predicted Secondary structure																																												.
Query SS confidence																																												.
Query Sequence		P	H	I	P	A	D	Q	F	P	A	Q	A	L	A	C	E	L	Y	K	V	A	G	I	R	A	V	E	I	G	S	F	L	L	G	R	D	P	K	T	G	K	Q	.	L	P	C	P	A	E	L	L	R	L	T	I	P	R	A	T	Y	T	Q	T	H	M	D	F	I	I	E	A	F	K	H	V	K	E	N
Query Conservation																																												.
Alig confidence		.	.																	.	.	.	.	.	.	.	.	.	.	.														.
Template Conservation		.	.																	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	A	T	H	E	T	A	D	L	D	E	L	N	K	A	L	R	.	.	.	.	.	.	.	.	.	.	.	L	E	A	L	T	R	G	I	A	V	L	G	E	T	I	V	D	G	K	T	A	L	K	F	T	I	L	N	P	C	L	T	T	S	D	F	E	S	L	L	S	K	I	N	X	L	A	V	E
Template Known Secondary structure		.	.				S	S	S											.	.	.	.	.	.	.	.	.	.	.							T	S		B							T	T											T	T
Template Predicted Secondary structure		.	.																	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
				892	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.												.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions