Job Description P0A853 Confidence 99.86% Date Thu Jan 5 11:06:55 GMT 2012 Rank 167 Aligned Residues 353 % Identity 10% Template c2o1bA_ PDB info PDB header:transferase Chain: A: PDB Molecule:aminotransferase, class i; PDBTitle: structure of aminotransferase from staphylococcus aureus Resolution 1.95 Å

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		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.						.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.										.	.	.	.
Predicted Secondary structure																																								.	.	.	.	.																									.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.																									.	.	.	.	.	.	.	.	.
Query Sequence		I	I	K	S	G	M	N	P	F	L	L	D	S	E	D	V	F	I	D	L	L	T	D	S	G	T	G	A	V	T	Q	S	M	Q	A	A	M	M	.	.	.	.	.	R	G	D	E	A	Y	S	G	S	R	S	Y	Y	A	L	A	E	S	V	K	N	I	F	G	.	.	.	.	.	.	.	.	.	Y	Q	Y	T
Query Conservation																																								.	.	.	.	.																									.	.	.	.	.	.	.	.	.
Alig confidence																																								.	.	.	.	.																									.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	A	N	I	P	D	S	Y	F	G	E	H	G	P	L	P	L	I	N	X	A	V	G	I	P	D	G	P	T	P	Q	G	I	I	D	H	F	Q	K	A	L	T	I	P	E	N	Q	K	Y	G	A	F	H	G	K	E	A	F	K	Q	A	I	V	D	F	Y	Q	R	Q	Y	N	V	T	L	D	K	E	D	E	V
Template Known Secondary structure				T	S				T	T					S	S									S		S	S														T	T						S				T	T																							T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	P	T	H	Q	G	R	G	A	E	Q	I	Y	I	P	V	L	I	K	K	R	E	Q	E	K	G	L	D	R	S	K	M	V	A	F	S	N	Y	F	F	D	T	T	Q	G	H	S	Q	I	N	G	C	T	V	R	N	V	Y	I	K	E	A	F	D	T	G	V	R	Y	D	F	K	G	N	F	D	L	E	G	L
Query Conservation
Alig confidence																															.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.
Template Conservation																															.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.
Template Sequence		C	I	L	Y	G	T	K	N	G	L	V	A	V	P	T	C	V	I	N	P	G	D	Y	V	L	L	P	D	P	.	.	.	.	.	.	.	.	.	G	Y	T	D	Y	L	A	G	V	L	L	A	D	G	K	P	V	P	L	N	L	E	P	P	.	.	.	.	.	.	.	.	.	H	Y	L	P	D	W	S	K	V
Template Known Secondary structure					S	S															T	T								S	.	.	.	.	.	.	.	.	.			S	S								T	T										T	T	.	.	.	.	.	.	.	.	.	T					G	G	G	S
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.										.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.										.	.	.	.	150	.	.	.	.
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	R	G	I	E	E	V	G	P	N	N	V	P	Y	I	V	A	T	I	T	S	N	S	A	G	G	Q	P	V	S	L	A	N	L	K	A	M	Y	S	I	A	K	K	Y	D	I	P	V	V	M	D	S	A	R	F	A	E	N	A	Y	F	I	K	Q	R	E	A	E	Y	K	D	W	T	I	E	Q	I	T	R	E
Query Conservation
Alig confidence								.	.	.	.															.																															.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.															.																															.	.	.	.	.	.	.	.	.	.
Template Sequence		D	S	Q	I	I	D	.	.	.	.	K	T	K	L	I	Y	L	T	Y	P	N	N	P	T	.	G	S	T	A	T	K	E	V	F	D	E	A	I	A	K	F	K	G	T	D	T	K	I	V	H	D	F	A	Y	G	.	.	.	.	.	.	.	.	.	.	A	F	G	F	D	A	K	N	P	S	I	L	A	S	E
Template Known Secondary structure								.	.	.	.									S	S		T	T	T	.																	T	T	S	S								T	T	T	.	.	.	.	.	.	.	.	.	.	T		B	S	S	S					G	G	G	S	T
Template Predicted Secondary structure								.	.	.	.															.																															.	.	.	.	.	.	.	.	.	.
Template SS confidence
		155	.	.	.	.	160					.	.	.	.	.	.	.	.	.	170	.	.	.	.		.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.											.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.			.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure																						.	.
Query SS confidence																						.	.
Query Sequence		T	Y	K	Y	A	D	M	L	A	M	S	A	K	K	D	A	M	V	P	M	.	.	G	G	L	L	C	M	K	D	D	S	F	F	D	V	Y	T	E	C	R	T	L	C	V	V	Q	E	G	F	P	T	Y	G	G	L	E	G	G	A	M	E	R	L	A	V	G	L	Y	D	G	M	N	L	D	W	L	A	Y	R
Query Conservation																						.	.
Alig confidence																						.	.																							.	.	.	.	.	.	.
Template Conservation																																														.	.	.	.	.	.	.
Template Sequence		N	G	K	D	V	A	I	E	I	Y	S	L	S	K	G	Y	N	X	S	G	F	R	V	G	F	A	V	G	N	K	D	X	I	Q	A	L	K	K	Y	Q	T	H	T	N	.	.	.	.	.	.	.	A	G	X	F	G	A	L	Q	D	A	A	I	Y	A	L	N	H	Y	D	D	F	L	E	E	Q	S	N	V	F
Template Known Secondary structure		T											S	T	T	T	T	T		G	G	G																								.	.	.	.	.	.	.
Template Predicted Secondary structure																																														.	.	.	.	.	.	.
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.								.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.		.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
Predicted Secondary structure																					.
Query SS confidence																					.
Query Sequence		I	A	Q	V	Q	Y	L	V	D	G	L	E	E	I	G	V	V	C	Q	.	Q	A	G	G	H	A	A	F	V	D	A	G	K	L	L	P	H	I	P	A	D	Q	F	P	A	Q	A	L	A	C	E	L	Y	K	V	A	G	I	R	A	V	E	I	G	S	F	L	L	G	R	D	P	K	T	G	K	Q	L	P	C
Query Conservation																					.
Alig confidence																					.															.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.
Template Sequence		K	T	R	R	D	R	F	E	A	X	L	A	K	A	D	L	P	F	V	H	A	K	G	G	I	Y	V	W	L	E	T	P	P	G	.	.	.	.	.	.	.	.	Y	D	S	E	Q	F	E	Q	F	L	V	Q	E	K	S	I	L	V	A	P	G	K	P	F	G	E	N	G	N	R	Y	.	.	.	.	.	.	.
Template Known Secondary structure															T	T								B	S	S								T	T	.	.	.	.	.	.	.	.																					S	G	G	G		G	G	G	T	T		.	.	.	.	.	.	.
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.
Template SS confidence
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.									.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
		414	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	E	L	L	R	L	T	I	P	R	A	T	Y	T	Q	T	H	M	D	F	I	I	E	A	F	K	H	V	K	E	N
Query Conservation
Alig confidence		.	.	.	.								.	.	.
Template Conservation		.	.	.	.								.	.	.
Template Sequence		.	.	.	.	V	R	I	S	L	A	L	.	.	.	D	D	Q	K	L	D	E	A	A	I	R	L	T	E	L	A	Y	L
Template Known Secondary structure		.	.	.	.							S	.	.	.		T	T											G	G	G	G	G
Template Predicted Secondary structure		.	.	.	.								.	.	.
Template SS confidence
						358	.	360	.	.	.	.				.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions