Job Description P0A853 Confidence 99.89% Date Thu Jan 5 11:06:55 GMT 2012 Rank 134 Aligned Residues 357 % Identity 18% Template c2o0rA_ PDB info PDB header:transferase Chain: A: PDB Molecule:rv0858c (n-succinyldiaminopimelate aminotransferase); PDBTitle: the three-dimensional structure of n-succinyldiaminopimelate2 aminotransferase from mycobacterium tuberculosis Resolution 2.00 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.		.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.										.	.	.	.
Predicted Secondary structure																																		.																																			.	.	.	.	.	.	.	.	.
Query SS confidence																																		.																																			.	.	.	.	.	.	.	.	.
Query Sequence		R	E	E	A	I	I	K	S	G	M	N	P	F	L	L	D	S	E	D	V	F	I	D	L	L	T	D	S	G	T	G	A	.	V	T	Q	S	M	Q	A	A	M	M	R	G	D	E	A	Y	S	G	S	R	S	Y	Y	A	L	A	E	S	V	K	N	I	F	G	.	.	.	.	.	.	.	.	.	Y	Q	Y	T
Query Conservation																																		.																																			.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.								.																																			.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.
Template Sequence		A	E	M	S	A	L	A	T	R	I	G	A	V	N	L	G	Q	G	F	.	.	.	.	.	.	P	D	E	D	G	P	P	K	M	L	Q	A	A	Q	D	A	I	A	G	G	V	N	Q	Y	P	P	G	P	G	S	A	P	L	R	R	A	I	A	A	Q	R	R	R	H	F	G	V	D	Y	D	P	E	T	E	V
Template Known Secondary structure										T	T	T				S	S		S	S	.	.	.	.	.	.		S	S																T	T			S				T	T																							T	T	T	S
Template Predicted Secondary structure																					.	.	.	.	.	.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.							.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	P	T	H	Q	G	R	G	A	E	Q	I	Y	I	P	V	L	I	K	K	R	E	Q	E	K	G	L	D	R	S	K	M	V	A	F	S	N	Y	F	F	D	T	T	Q	G	H	S	Q	I	N	G	C	T	V	R	N	V	Y	I	K	E	A	F	D	T	G	V	R	Y	D	F	K	G	N	F	D	L	E	G	L
Query Conservation
Alig confidence																															.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.
Template Conservation																															.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.
Template Sequence		L	V	T	V	G	A	T	E	A	I	A	A	A	V	L	G	L	V	E	P	G	S	E	V	L	L	I	E	P	.	.	.	.	.	.	.	.	.	F	Y	D	S	Y	S	P	V	V	A	M	A	G	A	H	R	V	T	V	P	L	V	P	D	G	R	.	.	.	.	.	.	.	G	F	A	L	D	A	D	A	L
Template Known Secondary structure																					T	T								S	.	.	.	.	.	.	.	.	.			T	T								T	T												T	T	.	.	.	.	.	.	.
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.										.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.								.	.	.	.	.	.	150	.	.
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	R	G	I	E	E	V	G	P	N	N	V	P	Y	I	V	A	T	I	T	S	N	S	A	G	G	Q	P	V	S	L	A	N	L	K	A	M	Y	S	I	A	K	K	Y	D	I	P	V	V	M	D	S	A	R	F	A	E	N	A	Y	F	I	K	Q	R	E	A	E	Y	K	D	W	T	I	E	Q	I	T	R	E
Query Conservation
Alig confidence								.	.	.	.															.																															.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.															.																															.	.	.	.	.	.	.	.	.	.
Template Sequence		R	R	A	V	T	P	.	.	.	.	R	T	R	A	L	I	I	N	S	P	H	N	P	T	.	G	A	V	L	S	A	T	E	L	A	A	I	A	E	I	A	V	A	A	N	L	V	V	I	T	D	E	V	Y	E	.	.	.	.	.	.	.	.	.	.	H	L	V	F	D	H	A	R	H	L	P	L	A	G	F
Template Known Secondary structure							T	.	.	.	.	T								S	S		T	T	T	.																			T	T								T	T	T	.	.	.	.	.	.	.	.	.	.	T		B		T	T						G	G	G	S
Template Predicted Secondary structure								.	.	.	.															.																															.	.	.	.	.	.	.	.	.	.
Template SS confidence
		153	.	.	.	.	.					.	160	.	.	.	.	.	.	.	.	.	170	.	.		.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.											.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.			.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure																						.	.
Query SS confidence																						.	.
Query Sequence		T	Y	K	Y	A	D	M	L	A	M	S	A	K	K	D	A	M	V	P	M	.	.	G	G	L	L	C	M	K	D	D	S	F	F	D	V	Y	T	E	C	R	T	L	C	V	V	Q	E	G	F	P	T	Y	G	G	L	E	G	G	A	M	E	R	L	A	V	G	L	Y	D	G	M	N	L	D	W	L	A	Y	R
Query Conservation																						.	.
Alig confidence																						.	.																							.	.	.	.	.	.	.
Template Conservation																																														.	.	.	.	.	.	.
Template Sequence		D	G	M	A	E	R	T	I	T	I	S	S	A	A	M	F	N	C	T	G	W	K	I	G	W	A	C	G	P	A	E	L	I	A	G	V	R	A	A	K	Q	Y	L	S	.	.	.	.	.	.	.	Y	V	G	G	A	P	F	Q	P	A	V	A	L	A	L	D	T	E	D	A	W	V	A	A	L	R	N	S	L
Template Known Secondary structure		T	T	T	G	G	G											S		T	T	T																							T	.	.	.	.	.	.	.	S				T	T
Template Predicted Secondary structure																																														.	.	.	.	.	.	.
Template SS confidence
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.								.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.		.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
Predicted Secondary structure																							.
Query SS confidence																							.
Query Sequence		I	A	Q	V	Q	Y	L	V	D	G	L	E	E	I	G	V	V	C	Q	Q	A	.	G	G	H	A	A	F	V	D	A	G	K	L	L	P	H	I	P	A	D	Q	F	P	A	Q	A	L	A	C	E	L	Y	K	V	A	G	I	R	A	V	E	I	G	S	F	L	L	G	R	D	P	K	T	G	K	Q	L	P	C
Query Conservation																							.
Alig confidence																							.												.	.	.	.	.	.																												.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.																												.	.	.	.	.	.	.	.
Template Sequence		R	A	R	R	D	R	L	A	A	G	L	T	E	I	G	F	A	V	H	D	S	Y	G	T	Y	F	L	C	A	D	P	R	P	.	.	.	.	.	.	L	G	Y	D	D	S	T	E	F	C	A	A	L	P	E	K	V	G	V	A	A	I	P	M	S	A	F	.	.	.	.	.	.	.	.	C	D	P	A	D	V
Template Known Secondary structure																T								B	S	S							G	G	.	.	.	.	.	.	G	T																S						G	G	G	G	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure																																			.	.	.	.	.	.																												.	.	.	.	.	.	.	.
Template SS confidence
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.							.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.									.	.	.	.	.	.
		414	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	E	L	L	R	L	T	I	P	R	A	T	Y	T	Q	T	H	M	D	F	I	I	E	A	F	K	H	V	K	E
Query Conservation
Alig confidence													.	.	.
Template Conservation													.	.	.
Template Sequence		W	N	H	L	V	R	F	T	F	C	K	.	.	.	R	D	D	T	L	D	E	A	I	R	R	L	S	V	L	A	E
Template Known Secondary structure		G	G	G								S	.	.	.													G	G	G	G
Template Predicted Secondary structure													.	.	.
Template SS confidence
		366	.	.	.	370	.	.	.	.	.	.				.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions