Job Description P0A853 Confidence 99.88% Date Thu Jan 5 11:06:55 GMT 2012 Rank 140 Aligned Residues 339 % Identity 16% Template c2huuA_ PDB info PDB header:transferase Chain: A: PDB Molecule:alanine glyoxylate aminotransferase; PDBTitle: crystal structure of aedes aegypti alanine glyoxylate2 aminotransferase in complex with alanine Resolution 2.10 Å

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		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.				.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.				.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure																					.	.	.																									.	.	.
Query SS confidence																					.	.	.																									.	.	.
Query Sequence		L	L	T	D	S	G	T	G	A	V	T	Q	S	M	Q	A	A	M	M	.	.	.	R	G	D	E	A	Y	S	G	S	R	S	Y	Y	A	L	A	E	S	V	K	N	I	F	G	.	.	.	Y	Q	Y	T	I	P	T	H	Q	G	R	G	A	E	Q	I	Y	I	P	V	L	I	K	K	R	E	Q	E	K	G	L
Query Conservation																					.	.	.																									.	.	.
Alig confidence											.										.	.	.																									.	.	.
Template Conservation											.
Template Sequence		L	M	G	P	G	P	S	N	A	.	P	Q	R	V	L	D	A	M	S	R	P	I	L	G	H	L	H	P	E	T	L	K	I	M	D	D	I	K	E	G	V	R	Y	L	F	Q	T	N	N	I	A	T	F	C	L	S	A	S	G	H	G	G	M	E	A	T	L	C	N	L	L	E	D	G	D	V	I	L	I	G
Template Known Secondary structure				S	S	S					.								T	T	S					T	T	S																			T				S						S	S																T	T
Template Predicted Secondary structure											.
Template SS confidence
		22	.	.	.	.	.	.	.	30		.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	S	K	M	V	A	F	S	N	Y	F	F	D	T	T	Q	G	H	S	Q	I	N	G	C	T	V	R	N	V	Y	I	K	E	A	F	D	T	G	V	R	Y	D	F	K	G	N	F	D	L	E	G	L	E	R	G	I	E	E	V	G	P	N	N	V	P	Y	I	V	A	T	I	T	S	N	S	A	G	G	Q
Query Conservation
Alig confidence						.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.																.	.	.																	.	.
Template Conservation						.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.																.	.	.																	.	.
Template Sequence		H	T	G	H	.	.	.	.	.	.	.	W	G	D	R	S	A	D	M	A	T	R	Y	G	A	D	V	R	V	V	K	S	K	V	.	.	.	.	.	.	.	.	.	.	G	Q	S	L	S	L	D	E	I	R	D	A	L	L	I	.	.	.	H	K	P	S	V	L	F	L	T	Q	G	D	S	S	T	G	.	.
Template Known Secondary structure			S	S		.	.	.	.	.	.	.												T	T										T	.	.	.	.	.	.	.	.	.	.	T															.	.	.				S						S			T	T	T	T	.	.
Template Predicted Secondary structure						.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.																.	.	.																	.	.
Template SS confidence
		101	.	.	.								.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.											.	.	130	.	.	.	.	.	.	.	.	.	140	.	.				.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	S	L	A	N	L	K	A	M	Y	S	I	A	K	K	Y	D	I	P	V	V	M	D	S	A	R	F	A	E	N	A	Y	F	I	K	Q	R	E	A	E	Y	K	D	W	T	I	E	Q	I	T	R	E	T	Y	K	Y	A	D	M	L	A	M	S	A	K	K	D	A	M	V	P	M	G	G	L	L	C	M	K
Query Conservation
Alig confidence		.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	V	L	Q	G	L	E	G	V	G	A	L	C	H	Q	H	N	C	L	L	I	V	D	T	V	A	S	L	G	G	A	P	M	F	M	D	R	W	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	D	A	M	Y	T	G	S	Q	V	L	G	A	P	P	G	I	T	P	V	S	F	S
Template Known Secondary structure		.	.						T	T								T	T								T	T	T	B	T	T	B				T	T	T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S													S	S
Template Predicted Secondary structure		.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
				159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.																		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.																	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.		.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.
Query Sequence		D	D	S	F	F	D	V	Y	T	E	C	R	T	L	C	V	V	Q	E	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	P	T	Y	G	G	L	E	G	G	A	M	E	R	L	A	V	G	L	Y	D	G	M	N	.	L	D	W	L	A	Y	R	I	A	Q	V	Q	Y	L	V	D	G	L	E
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.
Template Conservation
Template Sequence		H	R	A	V	E	R	Y	K	R	R	N	T	K	V	K	V	Y	Y	W	D	M	S	L	V	G	D	Y	W	G	C	F	G	R	P	R	I	Y	H	H	T	I	S	S	T	L	L	Y	G	L	R	E	A	I	A	M	A	C	E	E	G	L	P	A	L	I	A	R	H	E	D	C	A	K	R	L	Y	R	G	L	Q
Template Known Secondary structure										T		S	S			S		G	G	G									T	T		S	S	S					S
Template Predicted Secondary structure
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
		347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	G	V	V	C	Q	Q	A	G	G	H	A	A	F	V	D	A	G	K	L	L	P	H	I	P	A	D	Q	F	P	A	Q	A	L	A	C	E	L	Y	K	V	A	G	I	R	A	V	E	I	G	S	F	L	L	G	R	D	P	K	T	G	K	Q	L	P	C	P	A	E	L	L	R	L	T	I	P	R	A	T
Query Conservation
Alig confidence															.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	A	G	F	E	L	Y	A	D	P	K	D	R	.	.	.	.	L	S	T	V	T	T	I	K	V	P	Q	G	V	D	W	L	K	A	A	Q	Y	A	M	K	T	Y	L	V	E	I	S	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	L	G	P	T	A	G	Q	V	F	R	I	G	L	M	G	Q	N
Template Known Secondary structure			T	T			B	S	S		G	G	G	B	.	.	.	.		T	T								T	T																			B	.	.	.	.	.	.	.	.	.	.	.	.	.				G	G	G	T	T	T								G	G	G
Template Predicted Secondary structure															.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		301	.	.	.	.	.	.	.	.	310	.	.	.					.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.														.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
		427	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	T	Q	T	H	M	D	F	I	I	E	A	F	K	H	V	K	E	N	A	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	T	T	E	R	V	D	R	V	L	Q	V	F	Q	E	A	V	A	A	V	K
Template Known Secondary structure			S
Template Predicted Secondary structure
Template SS confidence
		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions