Job Description P0A853 Confidence 99.90% Date Thu Jan 5 11:06:55 GMT 2012 Rank 120 Aligned Residues 377 % Identity 16% Template c2hdyA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:selenocysteine lyase; PDBTitle: structure of human selenocysteine lyase Resolution 2.10 Å

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		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.		.	70	.	.	.	.	.	.	.												.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.			.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.										.	.	.	.	.	.	.	.	.	.	.																	.	.
Query SS confidence																											.										.	.	.	.	.	.	.	.	.	.	.																	.	.
Query Sequence		E	D	V	F	I	D	L	L	T	D	S	G	T	G	A	V	T	Q	S	M	Q	A	A	M	M	.	R	G	D	E	A	Y	S	G	S	.	.	.	.	.	.	.	.	.	.	.	R	S	Y	Y	A	L	A	E	S	V	K	N	I	F	G	Y	.	.	Q	Y	T	I	P	T	H	Q	G	R	G	A	E	Q	I	Y
Query Conservation																											.										.	.	.	.	.	.	.	.	.	.	.																	.	.
Alig confidence									.	.	.																.										.	.	.	.	.	.	.	.	.	.	.																	.	.
Template Conservation									.	.	.
Template Sequence		R	K	V	Y	M	D	Y	.	.	.	N	A	T	T	P	L	E	P	E	V	I	Q	A	M	T	K	A	M	W	E	A	W	G	N	P	S	S	P	Y	S	A	G	R	K	A	K	D	I	I	N	A	A	R	E	S	L	A	K	M	I	G	G	K	P	Q	D	I	I	F	T	S	G	G	T	E	S	N	N	L	V
Template Known Secondary structure							B	T	.	.	.	T	T																			S		S		T	T		S	S																						T			G	G	G					S
Template Predicted Secondary structure									.	.	.
Template SS confidence
		30	.	.	.	.	.	.				.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.				.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.
Query SS confidence																																		.	.	.
Query Sequence		I	P	V	L	I	K	K	R	E	Q	E	K	G	L	D	R	S	K	M	V	A	F	S	N	Y	F	F	D	T	T	Q	G	.	.	.	H	S	Q	I	N	G	C	T	V	R	N	V	Y	I	K	E	A	F	D	T	G	V	R	Y	D	F	K	G	N	F	D	L	E	G	L	E	R	G	I	E	E	V	G	P	N
Query Conservation																																		.	.	.
Alig confidence																																		.	.	.																		.	.	.	.	.	.	.	.	.																.	.	.	.
Template Conservation																																																						.	.	.	.	.	.	.	.	.																.	.	.	.
Template Sequence		I	H	S	V	V	K	H	F	H	A	N	Q	T	G	A	K	P	H	F	I	T	S	S	V	E	H	D	S	I	R	L	P	L	E	H	L	V	E	E	Q	V	A	A	V	T	F	V	P	V	S	K	V	.	.	.	.	.	.	.	.	.	S	G	Q	T	E	V	D	D	I	L	A	A	V	R	P	.	.	.	.
Template Known Secondary structure																								T	T															T	T	S										T	T	.	.	.	.	.	.	.	.	.	T	S	S									T			T	.	.	.	.
Template Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.																.	.	.	.
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.										.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	V	P	Y	I	V	A	T	I	T	S	N	S	A	G	G	Q	P	V	S	L	A	N	L	K	A	M	Y	S	I	A	K	K	Y	D	I	P	V	V	M	D	S	A	R	F	A	E	N	A	Y	F	I	K	Q	R	E	A	E	Y	K	D	W	T	I	E	Q	I	T	R	E	T	Y	K	Y	A	D	M	L	A	M
Query Conservation
Alig confidence																	.	.	.	.																																																		.	.	.	.	.	.	.
Template Conservation																	.	.	.	.																																																		.	.	.	.	.	.	.
Template Sequence		T	T	R	L	V	T	I	M	L	A	N	N	E	T	G	.	.	.	.	I	V	M	P	V	P	E	I	S	Q	R	I	K	A	L	N	Q	E	R	V	A	A	G	L	P	P	I	L	V	H	T	D	A	A	Q	A	L	G	K	Q	R	V	D	V	E	D	L	G	V	.	.	.	.	.	.	.	D	F	L	T	I
Template Known Secondary structure		T								S	B		T	T	T		.	.	.	.	B	B																				T	T											T	T	T	T	T	T	S										.	.	.	.	.	.	.	S
Template Predicted Secondary structure																	.	.	.	.																																																		.	.	.	.	.	.	.
Template SS confidence
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.					.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250								.	.	.	.	.
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	K	K	D	A	M	V	P	M	G	G	L	L	C	M	K	D	D	S	F	F	D	V	Y	T	E	C	R	T	L	C	V	V	Q	E	G	F	P	T	Y	G	G	L	E	G	G	A	M	E	R	L	A	V	G	L	Y	D	G	M	N	L	D	W	L	A	Y	R	I	A	Q	V	Q	Y	L	V	D	G	L	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	G	H	K	F	Y	G	P	R	I	G	A	L	Y	I	R	G	L	G	E	F	T	P	L	Y	P	M	L	F	G	G	G	Q	E	R	N	F	R	P	G	T	E	N	T	P	M	I	A	G	L	G	K	A	A	E	L	V	T	Q	N	C	E	A	Y	E	A	H	M	R	D	V	R	D	Y	L	E	E	R	L	E
Template Known Secondary structure			G	G	G	T	T	S		S							T	T	B	T	T	T	B					S			S	S		G	G	G	G	T	S		S
Template Predicted Secondary structure
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
		347	.		.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.							.	.	.	410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure				.																																																											.	.	.	.	.	.
Query SS confidence				.																																																											.	.	.	.	.	.
Query Sequence		E	I	.	G	V	V	C	Q	Q	A	G	G	H	A	A	F	V	D	A	G	K	L	L	P	H	I	P	A	D	Q	F	P	A	Q	A	L	A	C	E	L	Y	K	V	A	G	I	R	A	V	E	I	G	S	F	L	L	G	R	D	P	K	.	.	.	.	.	.	T	G	K	Q	L	P	C	P	A	E	L	L	R
Query Conservation				.																																																											.	.	.	.	.	.
Alig confidence				.																																																											.	.	.	.	.	.
Template Conservation
Template Sequence		A	E	F	G	Q	K	R	I	H	L	N	S	Q	F	P	G	T	Q	R	L	P	N	T	C	N	F	S	I	R	G	P	R	L	Q	G	H	V	V	L	A	Q	C	R	V	L	M	A	S	V	G	A	A	C	H	S	D	H	G	D	Q	P	S	P	V	L	L	S	Y	G	V	P	F	D	V	A	R	N	A	L	R
Template Known Secondary structure						G	G	G				S	S			T	T			B		S	S									T	T											S	S				B	S	S	S	S			S	S		S	S									T	T								T
Template Predicted Secondary structure
Template SS confidence
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
		420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	I	P	R	A	T	Y	T	Q	T	H	M	D	F	I	I	E	A	F	K	H	V	K	E	N	A	A	N
Query Conservation
Alig confidence				.
Template Conservation				.
Template Sequence		L	S	.	V	G	R	S	T	T	R	A	E	V	D	L	V	V	Q	D	L	K	Q	A	V	A	Q	L	E	D
Template Known Secondary structure				.			S	S
Template Predicted Secondary structure				.
Template SS confidence
		416	.		.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions