Job Description P0A853 Confidence 99.97% Date Thu Jan 5 11:06:55 GMT 2012 Rank 45 Aligned Residues 341 % Identity 20% Template c2dkjB_ PDB info PDB header:transferase Chain: B: PDB Molecule:serine hydroxymethyltransferase; PDBTitle: crystal structure of t.th.hb8 serine hydroxymethyltransferase Resolution 1.15 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		48	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.												.	70	.	.	.	.	.	.	.	.	.	80	.	.					.	.	.	.	.	.	.	90	.	.	.	.	.	.		.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.															.	.	.	.															.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.															.	.	.	.															.
Query Sequence		I	D	L	L	T	D	S	G	T	G	A	V	T	Q	S	M	Q	A	A	M	M	.	.	.	.	.	.	.	.	.	.	.	R	G	D	E	A	Y	S	G	S	R	S	Y	Y	A	.	.	.	.	L	A	E	S	V	K	N	I	F	G	Y	Q	Y	T	.	I	P	T	H	Q	G	R	G	A	E	Q	I	Y	I	P
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.															.	.	.	.															.
Alig confidence					.	.																	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.															.
Template Conservation					.	.
Template Sequence		L	E	L	.	.	I	A	S	E	N	F	V	S	K	Q	V	R	E	A	V	G	S	V	L	T	N	K	Y	A	E	G	Y	P	G	A	R	Y	Y	G	G	C	E	V	I	D	R	V	E	S	L	A	I	E	R	A	K	A	L	F	G	A	A	W	A	N	V	Q	P	H	S	G	S	Q	A	N	M	A	V	Y	M
Template Known Secondary structure					.	.		T	T													T	S	G	G	G	G							T	T			S	S	S																					T		S							S	S
Template Predicted Secondary structure					.	.
Template SS confidence
		26	.	.			.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	I	K	K	R	E	Q	E	K	G	L	D	R	S	K	M	V	A	F	S	N	Y	F	F	D	T	T	Q	G	H	S	Q	I	N	G	C	T	V	R	N	V	Y	I	K	E	A	F	D	T	G	V	R	Y	D	F	K	G	N	F	D	L	E	G	L	E	R	G	I	E	E	V	G	P	N	N	V	P	Y	I
Query Conservation
Alig confidence																			.	.	.	.	.	.																								.	.	.	.	.	.	.																			.	.	.	.
Template Conservation																			.	.	.	.	.	.																								.	.	.	.	.	.	.																			.	.	.	.
Template Sequence		A	L	M	E	P	G	D	T	L	M	G	M	D	L	A	A	G	.	.	.	.	.	.	G	H	L	T	H	G	S	R	V	N	F	S	G	K	L	Y	K	V	V	S	Y	G	V	.	.	.	.	.	.	.	R	P	D	T	E	L	I	D	L	E	E	V	R	R	L	A	L	E	.	.	.	.	H	R	P	K	V
Template Known Secondary structure						T	T								G	G	G	T	.	.	.	.	.	.			G	G	G	T		T	T	S						S								.	.	.	.	.	.	.		T	T	T		S													.	.	.	.				S
Template Predicted Secondary structure																			.	.	.	.	.	.																								.	.	.	.	.	.	.																			.	.	.	.
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120							.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.								.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.					.	.	.	.	.
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	T	I	T	S	N	S	A	G	G	Q	P	V	S	L	A	N	L	K	A	M	Y	S	I	A	K	K	Y	D	I	P	V	V	M	D	S	A	R	F	A	E	N	A	Y	F	I	K	Q	R	E	A	E	Y	K	D	W	T	I	E	Q	I	T	R	E	T	Y	K	Y	A	D	M	L	A	M	S	A	K	K	D
Query Conservation
Alig confidence											.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	V	A	G	A	S	A	Y	P	.	.	.	.	.	R	F	W	D	F	K	A	F	R	E	I	A	D	E	V	G	A	Y	L	V	V	D	M	A	H	F	A	G	L	V	A	A	G	L	H	P	N	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	P	Y	A	H	V	V	T	S	T	T	H	K	T
Template Known Secondary structure							S	S			.	.	.	.	.	S															T								T	T	T						T	T	S	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T		S						S	S	G	G
Template Predicted Secondary structure											.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		167	.	.	170	.	.	.	.	.						.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.															.	.	.	.	.	.	220	.	.	.	.	.	.	.
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.				.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																											.	.	.
Query SS confidence																																																											.	.	.
Query Sequence		A	M	V	P	M	G	G	L	L	C	M	K	D	D	S	F	F	D	V	Y	T	E	C	R	T	L	C	V	V	Q	E	G	F	P	T	Y	G	G	L	E	G	G	A	M	E	R	L	A	V	G	L	Y	D	G	M	N	L	.	.	.	D	W	L	A	Y	R	I	A	Q	V	Q	Y	L	V	D	G	L	E	E	I
Query Conservation																																																											.	.	.
Alig confidence																													.	.	.	.	.	.	.																								.	.	.
Template Conservation																													.	.	.	.	.	.	.
Template Sequence		L	R	G	P	R	G	G	L	I	L	S	N	D	P	E	L	G	K	R	I	D	K	L	I	F	P	G	.	.	.	.	.	.	.	I	Q	G	G	P	L	E	H	V	I	A	G	K	A	V	A	F	F	E	A	L	Q	P	E	F	K	E	Y	S	R	L	V	V	E	N	A	K	R	L	A	E	E	L	A	R	R
Template Known Secondary structure		G				S							S													T	T	T	.	.	.	.	.	.	.	T		S	S																	T	S																							T	T
Template Predicted Secondary structure																													.	.	.	.	.	.	.
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.								.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
		349	350	.	.	.			.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.				.	.
Predicted Secondary structure							.	.																																																																					.	.	.
Query SS confidence							.	.																																																																					.	.	.
Query Sequence		G	V	V	C	Q	.	.	Q	A	G	G	H	A	A	F	V	D	A	G	K	L	L	P	H	I	P	A	D	Q	F	P	A	Q	A	L	A	C	E	L	Y	K	V	A	G	I	R	A	V	E	I	G	S	F	L	L	G	R	D	P	K	T	G	K	Q	L	P	C	P	A	E	L	L	R	L	T	.	.	.	I	P
Query Conservation							.	.																																																																					.	.	.
Alig confidence							.	.											.	.	.	.	.	.	.																.																							.	.	.	.	.	.	.							.	.	.
Template Conservation																			.	.	.	.	.	.	.																.																							.	.	.	.	.	.	.
Template Sequence		G	Y	R	I	V	T	G	G	T	D	N	H	L	F	L	V	D	.	.	.	.	.	.	.	L	R	P	K	G	L	T	G	K	E	A	E	E	R	L	.	D	A	V	G	I	T	V	N	K	N	A	I	P	F	D	P	K	P	P	R	V	T	.	.	.	.	.	.	.	S	G	I	R	I	G	T	P	A	I	T
Template Known Secondary structure		T				G	G	G	S		S	S	S						.	.	.	.	.	.	.		G	G	G	T											.		T	T	T									T	T			S		T	T	T		.	.	.	.	.	.	.	S
Template Predicted Secondary structure																			.	.	.	.	.	.	.																.																							.	.	.	.	.	.	.
Template SS confidence
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.								.	.	320	.	.	.	.	.	.	.	.	.	330	.	.		.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.								.	.	.	.	.	360	.	.	.	.	.
		424	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	T	Y	T	Q	T	H	M	D	F	I	I	E	A	F	K	H	V	K	E	N	A	A	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	R	G	F	T	P	E	E	M	P	L	V	A	E	L	I	D	R	A	L	L	E	G	P	S
Template Known Secondary structure			T	T			G	G	G
Template Predicted Secondary structure
Template SS confidence
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions