Job Description Q46909 Confidence 99.96% Date Thu Jan 5 12:35:47 GMT 2012 Rank 3 Aligned Residues 400 % Identity 15% Template c3o7pA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:l-fucose-proton symporter; PDBTitle: crystal structure of the e.coli fucose:proton symporter, fucp (n162a) Resolution 3.20 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	F	G	A	H	L	T	D	G	Y	V	L	G	V	I	G	Y	A	I	I	Q	L	T	P	A	M	Q	L	T	P	F	M	A	G	M	I	G	G	S	A	L	L	G	L	F	L	G	S	L	V	L	G	W	I	S	D	H	I	G	R	Q	K	I	F	T	F	S	F	L	L	I	T	L	A	S	F	L	Q	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	P	F	A	L	L	C	S	L	F	F	L	W	A	V	A	N	N	L	N	D	I	L	L	P	Q	F	Q	Q	A	F	F	Q	A	G	L	I	Q	S	A	F	Y	F	G	Y	F	I	I	P	I	P	A	G	I	L	M	K	K	L	S	Y	K	A	G	I	I	T	G	L	F	L	Y	A	L	G	A	A	L	F	W
Template Known Secondary structure																														T	T			T	T													T	T											S																			T
Template Predicted Secondary structure
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
		103	.				.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.
Query SS confidence				.	.	.
Query Sequence		F	A	.	.	.	T	T	P	E	H	L	I	G	L	R	I	L	I	G	I	G	L	G	G	D	Y	S	V	G	H	T	L	L	A	E	F	S	P	R	R	H	R	G	I	L	L	G	A	F	S	V	V	W	T	V	G	Y	V	L	A	S	I	A	G	H	H	F	I	S	E	N	P	E	A	W	R	W	L	L	A
Query Conservation				.	.	.
Alig confidence				.	.	.
Template Conservation
Template Sequence		P	A	A	E	I	M	N	Y	T	L	F	L	V	G	L	F	I	I	A	A	G	L	G	C	L	E	T	A	A	N	P	F	V	T	V	L	G	P	E	S	S	G	H	F	R	L	N	L	A	Q	T	F	A	S	F	G	A	I	I	A	V	V	F	G	Q	S	L	I	L	S	N	V	P	H	Q	S	Q	D	V	L
Template Known Secondary structure						T	T																														S	S		G	G	G																										T	T	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	A	L	P	A	L	L	I	T	L	L	R	W	G	T	P	E	S	P	R	W	L	L	R	Q	G	R	F	A	E	A	H	A	I	V	H	R	Y	F	G	P	H	V	L	L	G	D	E	V	V	T	A	T	H	K	H	I	K	T	L	F	S	S	R	Y	W	R	R	T	A	F	N	S	V	F	F	V	C	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	K	M	S	P	E	Q	L	S	A	Y	K	H	S	L	V	L	S	V	Q	T	P	Y	M	I	I	V	A	I	V	L	L	V	A	L	L	I	M	L	T	K	F	P	A	L	Q	S	D	N	H	S	D	A	K	Q	G	S	F	S	A	S	L	S	R	L	A	R	I	R	H	W	R	W	A	V	L	A	Q	F	C
Template Known Secondary structure				S																	T	T																			S						T	T	T					S	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.				.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.
Query SS confidence																				.	.	.
Query Sequence		V	I	P	W	F	V	I	Y	T	W	L	P	T	I	A	Q	T	I	.	.	.	G	L	E	D	A	L	T	A	S	L	M	L	N	A	L	L	I	V	G	A	L	L	G	L	V	L	T	H	L	L	A	H	R	K	F	L	L	G	S	F	L	L	L	A	A	T	L	V	V	M	A	C	L	P	S	G	S	S	L
Query Conservation																				.	.	.
Alig confidence																				.	.	.
Template Conservation
Template Sequence		Y	V	G	A	Q	T	A	C	W	S	Y	L	I	R	Y	A	V	E	E	I	P	G	M	T	A	G	F	A	A	N	Y	L	T	G	T	M	V	C	F	F	I	G	R	F	T	G	T	W	L	I	S	R	F	A	P	H	K	V	L	A	A	Y	A	L	I	A	M	A	L	C	L	I	S	A	F	A	G	G	H	V
Template Known Secondary structure																					S	T	T																															S																							S
Template Predicted Secondary structure
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	L	L	F	V	L	F	S	T	T	I	S	A	V	S	N	L	V	G	I	L	P	A	E	S	F	P	T	D	I	R	S	L	G	V	G	F	A	T	A	M	S	R	L	G	A	A	V	S	T	G	L	L	P	W	V	L	A	Q	W	G	M	Q	V	T	L	L	L	L	A	T	V	L	L	V	G	F	V	V
Query Conservation
Alig confidence																																				.	.
Template Conservation																																				.	.
Template Sequence		G	L	I	A	L	T	L	C	S	A	F	M	S	I	Q	Y	P	T	I	F	S	L	G	I	K	N	L	G	Q	D	T	K	Y	G	.	.	S	S	F	I	V	M	T	I	I	G	G	G	I	V	T	P	V	M	G	F	V	S	D	A	A	G	N	I	P	T	A	E	L	I	P	A	L	C	F	A	V	I	F	I
Template Known Secondary structure														T	T											S	S		G	G	G					.	.							G	G	G																	T	S	S	G	G	G	G
Template Predicted Secondary structure																																				.	.
Template SS confidence
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.			.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.
		417	.	.	420	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	W	L	W	A	P	E	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	A	R	F	R	S	Q	T
Template Known Secondary structure				T	S
Template Predicted Secondary structure
Template SS confidence
		428	.	430	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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