Job Description Q46909 Confidence 99.90% Date Thu Jan 5 12:35:47 GMT 2012 Rank 5 Aligned Residues 396 % Identity 13% Template c2xutC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:proton/peptide symporter family protein; PDBTitle: crystal structure of a proton dependent oligopeptide (pot)2 family transporter. Resolution 3.62 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.							50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.		.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.																																	.
Query SS confidence																														.	.	.	.	.	.																																	.
Query Sequence		A	L	T	F	G	A	H	L	T	D	G	Y	V	L	G	V	I	G	Y	A	I	I	Q	L	T	P	A	M	.	.	.	.	.	.	Q	L	T	P	F	M	A	G	M	I	G	G	S	A	L	L	G	L	F	L	G	S	L	V	L	G	W	I	S	D	H	I	.	G	R	Q	K	I	F	T	F	S	F	L	L	I
Query Conservation																														.	.	.	.	.	.																																	.
Alig confidence																														.	.	.	.	.	.																																	.
Template Conservation
Template Sequence		Y	I	I	A	S	E	A	C	E	R	F	S	F	Y	G	M	R	N	I	L	T	P	F	L	M	T	A	L	L	L	S	I	P	E	E	L	R	G	A	V	A	K	D	V	F	H	S	F	V	I	G	V	Y	F	F	P	L	L	G	G	W	I	A	D	R	F	F	G	K	Y	N	T	I	L	W	L	S	L	I	Y
Template Known Secondary structure																												S		S	S			S	S	S	T	T	T	T	T															T									T	T	S	S		S
Template Predicted Secondary structure
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		95	.	.	.	.	100	.	.	.	.		.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.						.	.
Predicted Secondary structure												.																																																															.	.	.	.	.
Query SS confidence												.																																																															.	.	.	.	.
Query Sequence		T	L	A	S	F	L	Q	F	F	A	.	T	T	P	E	H	L	I	G	L	R	I	L	I	G	I	G	L	G	G	D	Y	S	V	G	H	T	L	L	A	E	F	S	P	R	R	H	R	G	I	L	L	G	A	F	S	V	V	W	T	V	G	Y	V	L	A	S	I	A	G	H	H	F	.	.	.	.	.	I	S
Query Conservation												.																																																															.	.	.	.	.
Alig confidence												.																																																															.	.	.	.	.
Template Conservation
Template Sequence		C	V	G	H	A	F	L	A	I	F	E	H	S	V	Q	G	F	Y	T	G	L	F	L	I	A	L	G	S	G	G	I	K	P	L	V	S	S	F	M	G	D	Q	F	D	Q	S	N	K	S	L	A	Q	K	A	F	D	M	F	Y	F	T	I	N	F	G	S	F	F	A	S	L	S	M	P	L	L	L	K	N	F
Template Known Secondary structure											T	S	S																		T	T											T		S	T	T	T	T	T																							T	S	T					T	S
Template Predicted Secondary structure
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure																																																																												.	.	.	.	.	.
Query SS confidence																																																																												.	.	.	.	.	.
Query Sequence		E	N	P	E	A	W	R	W	L	L	A	S	A	A	L	P	A	L	L	I	T	L	L	R	W	G	T	P	E	S	P	R	W	L	L	R	Q	G	R	F	A	E	A	H	A	I	V	H	R	Y	F	G	P	H	V	L	L	G	D	E	V	V	T	A	T	H	K	H	I	K	T	L	F	S	.	.	.	.	.	.
Query Conservation																																																																												.	.	.	.	.	.
Alig confidence																																																																												.	.	.	.	.	.
Template Conservation
Template Sequence		G	A	A	V	A	F	G	I	P	G	V	L	M	F	V	A	T	V	F	F	W	L	G	R	K	R	Y	I	H	M	P	V	E	G	K	G	N	I	G	L	V	L	A	L	I	G	G	V	S	A	A	Y	A	L	V	N	I	P	T	L	G	I	V	A	G	L	C	C	A	M	V	L	V	M	G	F	V	G	A	G
Template Known Secondary structure																							S	S	S	S	S							T	T																			T	G	G	G	T	T	T	T		S	S																T	G
Template Predicted Secondary structure
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
																				243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	R	Y	W	R	R	T	A	F	N	S	V	F	F	V	C	L	V	I	P	W	F	V	I	Y	T	W	L	P	T	I	A	Q	T	I	G	L	E	D	A	L	T	A	S	L	M	L	N	A	L	L	I	V	G	A	L	L	G	L	V	L	T
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	S	L	Q	L	E	R	A	R	K	S	H	P	D	A	A	V	D	G	V	R	S	V	L	R	I	L	V	L	F	A	L	V	T	P	F	W	S	L	F	D	Q	K	A	S	T	W	I	L	Q	A	N	D	M	V	K	P	Q	W	F	E	P	A	M	M	Q	A	L	N	P	L	L	V	M	L	L	I	P	F	N
Template Known Secondary structure		G	G	T					S			S			S	S	S	S	T	T	T	T	T									T	T	S					T	T	T	S	S	T	T	T									S				S	S	S							T	T	S	G	G	G					G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330									.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.
Query Sequence		H	L	L	A	H	R	K	F	L	L	G	S	F	L	L	L	A	A	T	L	V	V	M	A	C	L	.	.	.	.	.	.	.	.	P	S	G	S	S	L	T	L	L	L	F	V	L	F	S	T	T	I	S	A	V	S	N	L	V	G	I	L	P	A	E	S	F	P	T	D	I	R	S	L	G	V	G	F	A	T
Query Conservation																												.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	F	V	T	A	L	R	K	M	G	A	G	I	A	I	T	G	L	S	W	I	V	V	G	T	I	Q	L	M	M	D	G	G	S	A	L	S	I	F	W	Q	I	L	P	Y	A	L	L	T	F	G	E	V	L	V	S	A	T	G	L	E	F	A	Y	S	Q	A	P	K	A	M	K	G	T	I	M	S	F	W	T
Template Known Secondary structure		T	T									T											T	T	T	T	T	T	T	T	T	T	T	T					S																						T	T	T							T	T			T	T	T					G
Template Predicted Secondary structure
Template SS confidence
		356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.
		377	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.												.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	M	S	R	L	G	A	A	V	S	T	G	L	L	P	W	V	L	A	Q	W	.	.	.	.	.	.	.	.	.	.	.	G	M	Q	V	T	L	L	L	L	A	T	V	L	L	V	G	F	V	V	T
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	S	V	T	V	G	N	L	W	V	L	L	A	N	V	S	V	K	S	P	T	V	T	E	Q	I	V	Q	T	G	M	S	V	T	A	F	Q	M	F	F	F	A	G	F	A	I	L	A	A	I	V	F
Template Known Secondary structure		G	G															T	T	S												S
Template Predicted Secondary structure
Template SS confidence
		448	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.