Job Description P11989 Confidence 100.00% Date Thu Jan 5 11:33:03 GMT 2012 Rank 1 Aligned Residues 219 % Identity 42% Template c1h99A_ PDB info PDB header:transcriptional antiterminator Chain: A: PDB Molecule:transcription antiterminator lict; PDBTitle: prd of lict antiterminator from bacillus subtilis Resolution 1.55 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.		.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure																																			.
Query SS confidence																																			.
Query Sequence		E	L	N	G	R	L	S	E	L	L	S	H	I	P	L	E	V	M	A	T	C	D	R	I	I	S	L	A	Q	E	R	L	G	.	K	L	Q	D	S	I	Y	I	S	L	T	D	H	C	Q	F	A	I	K	R	F	Q	Q	N	V	L	L	P	N	P	L	L	W	D	I	Q	R	L	Y	P	K	E	F	Q	L	G
Query Conservation																																			.
Alig confidence																																			.
Template Conservation
Template Sequence		G	A	M	E	K	F	K	T	L	L	Y	D	I	P	I	E	C	M	E	V	S	E	E	I	I	S	Y	A	K	L	Q	L	G	K	K	L	N	D	S	I	Y	V	S	L	T	D	H	I	N	F	A	I	Q	R	N	Q	K	G	L	D	I	K	N	A	L	L	W	E	T	K	R	L	Y	K	D	E	F	A	I	G
Template Known Secondary structure			T	T	G	G	G	T	S			S																							S				T																			T	T						T	T								T
Template Predicted Secondary structure
Template SS confidence
		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	E	A	L	T	I	I	D	K	R	L	G	V	Q	L	P	K	D	E	V	G	F	I	A	M	H	L	V	S	A	Q	M	S	G	N	M	E	D	V	A	G	V	T	Q	L	M	R	E	M	L	Q	L	I	K	F	Q	F	S	L	N	Y	Q	E	E	S	L	S	Y	Q	R	L	V	T	H	L	K	F	L	S	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	E	A	L	V	M	V	K	N	K	T	G	V	S	L	P	E	D	E	A	G	F	I	A	L	H	I	V	N	A	E	L	N	E	E	M	P	N	I	I	N	I	T	K	V	M	E	E	I	L	S	I	V	K	Y	H	F	K	I	E	F	N	E	E	S	L	H	Y	Y	R	F	V	T	D	L	K	F	F	A	Q
Template Known Secondary structure													S																				T	T	S																								T					T	T	S
Template Predicted Secondary structure
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	I	L	E	H	A	S	I	N	D	S	D	E	S	L	Q	Q	A	V	K	Q	N	Y	P	Q	A	W	Q	C	A	E	R	I	A	I	F	I	G	L	Q	Y	Q	R	K	I	S	P	A	E	I	M	F	L	A	I	N	I	E	R	V	R	K
Query Conservation
Alig confidence													.	.
Template Conservation													.	.
Template Sequence		R	L	F	N	G	T	H	M	E	D	D	.	.	F	L	L	D	T	V	K	E	K	Y	H	R	A	Y	E	C	T	K	K	I	Q	T	Y	I	E	R	E	Y	E	H	K	L	T	S	D	E	L	L	Y	L	T	I	D	I	E	R	V	V	K
Template Known Secondary structure						T						T	.	.										T
Template Predicted Secondary structure													.	.
Template SS confidence
		214	.	.	.	.	.	220	.	.	.	.			.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions