Job Description P75948 Confidence 99.95% Date Thu Jan 5 12:16:18 GMT 2012 Rank 13 Aligned Residues 249 % Identity 14% Template c3lzhA_ PDB info PDB header:transferase Chain: A: PDB Molecule:aph(2")-id/aph(2")-iva; PDBTitle: crystal structure of aminoglycoside phosphotransferase aph(2")-2 id/aph(2")-iva Resolution 2.00 Å

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		12	.	.	.	.	.	.	.	20			.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.				.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure											.	.																																																						.	.	.													.
Query SS confidence											.	.																																																						.	.	.													.
Query Sequence		D	E	L	L	S	R	F	F	P	.	.	Q	Y	H	P	V	T	T	F	N	S	G	L	S	G	G	S	F	L	I	E	H	Q	G	Q	R	F	V	V	R	Q	P	H	D	P	D	A	P	Q	S	A	F	L	R	Q	Y	R	A	L	S	Q	L	P	A	.	.	.	C	I	A	P	K	P	H	L	Y	L	R	D	.
Query Conservation											.	.																																																						.	.	.													.
Alig confidence											.	.																				.	.	.										.																						.	.	.													.
Template Conservation																																.	.	.										.
Template Sequence		E	E	A	I	E	Q	L	Y	P	D	F	T	I	N	T	I	E	I	S	G	E	G	N	D	C	I	A	Y	E	I	.	.	.	N	G	N	F	I	F	K	F	P	.	K	H	S	R	A	S	I	N	L	L	N	E	V	T	V	L	K	T	I	H	N	E	L	S	L	P	I	P	E	V	V	F	T	G	X	P	S
Template Known Secondary structure										T	T													S	S							.	.	.	T	T	T							.	S	S																		T	T		S	S	S
Template Predicted Secondary structure																																.	.	.										.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.				40	.	.	.	.	.	.	.	.		.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
								86	.	.	.	90	.	.	.	.	.	.	.	.	.	100												.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure		.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.																																											.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.																																											.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	W	M	V	V	D	Y	L	P	G	A	V	K	T	Y	L	.	.	.	.	.	.	.	.	.	.	.	P	D	T	N	E	L	A	G	L	L	Y	Y	L	H	Q	Q	P	R	F	G	W	R	I	T	L	L	P	L	L	E	L	Y	W	Q	Q	S	D	P	A	R	R	T	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.																																											.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.																																											.	.	.	.	.	.
Template Conservation
Template Sequence		E	X	C	Q	X	S	F	A	G	F	T	K	I	K	G	V	P	L	T	P	L	L	L	K	N	L	P	K	Q	S	Q	D	Q	A	A	K	D	L	A	R	F	L	S	E	L	H	S	I	N	I	S	G	F	K	S	N	L	V	L	D	F	R	E	K	I	N	E	D	N	K	K	I	K	K	L	L	S	R	E	L
Template Known Secondary structure		S	S		S		S																				S																						S			T	T	S		G	G	G	B																		T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
							143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.				.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure		.	.	.	.	.																																								.	.	.
Query SS confidence		.	.	.	.	.																																								.	.	.
Query Sequence		.	.	.	.	.	V	G	W	L	R	M	L	K	R	L	R	K	A	R	E	P	R	P	L	R	L	S	P	L	H	M	D	V	H	A	G	N	L	V	H	S	A	S	G	.	.	.	L	K	L	I	D	W	E	Y	A	G	D	G	D	I	A	L	E	L	A	A	V	W	V	E	N	T	E	Q	H	R	Q	L	V
Query Conservation		.	.	.	.	.																																								.	.	.
Alig confidence		.	.	.	.	.																																								.	.	.
Template Conservation
Template Sequence		K	G	H	Q	X	K	K	V	D	D	F	Y	R	D	I	L	D	N	E	I	Y	F	K	Y	Y	P	C	L	I	H	N	D	F	S	S	D	H	I	L	F	D	T	E	K	N	T	I	C	G	I	I	D	F	G	D	A	A	I	S	D	P	D	N	D	F	I	S	L	X	E	D	D	E	E	Y	G	X	E	F	V
Template Known Secondary structure																		T		G	G	G	T									S	S		S	G	G	G					T	T	T	T									T	T						T	T					T	T	B		T	T	T	S	B
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		215	.	.	.	.	220	.	.		.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure										.
Query SS confidence										.
Query Sequence		N	D	Y	A	T	R	A	K	.	I	Y	P	A	Q	L	W	R	Q	V	R	R	W	F	P	W	L	L	M	L	K	A	G	W	F	E	Y	R	W	R	Q	T	G	D	Q	Q	F	I	R	L	A	D	D	T	W	R
Query Conservation										.
Alig confidence										.																										.	.	.	.
Template Conservation																																				.	.	.	.
Template Sequence		S	K	I	L	N	H	Y	K	H	K	D	I	P	T	V	L	E	K	Y	X	X	K	E	K	Y	W	S	F	E	K	I	I	Y	G	.	.	.	.	K	E	Y	G	Y	X	D	W	Y	E	E	G	L	N	E	I	R
Template Known Secondary structure								T	T		S																									.	.	.	.		S	S	S
Template Predicted Secondary structure																																				.	.	.	.
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.					280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions