Job Description P75948 Confidence 99.95% Date Thu Jan 5 12:16:18 GMT 2012 Rank 14 Aligned Residues 254 % Identity 15% Template c3hamA_ PDB info PDB header:transferase Chain: A: PDB Molecule:aminoglycoside phosphotransferase; PDBTitle: structure of the gentamicin-aph(2")-iia complex Resolution 2.50 Å

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		12	.	.	.	.	.	.	.	20			.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.					.	.	.	80	.	.	.	.	.
Predicted Secondary structure											.	.																																																									.	.	.	.
Query SS confidence											.	.																																																									.	.	.	.
Query Sequence		D	E	L	L	S	R	F	F	P	.	.	Q	Y	H	P	V	T	T	F	N	S	G	L	S	G	G	S	F	L	I	E	H	Q	G	Q	R	F	V	V	R	Q	P	H	D	P	D	A	P	Q	S	A	F	L	R	Q	Y	R	A	L	S	Q	L	P	A	C	I	A	.	.	.	.	P	K	P	H	L	Y	L	R	D
Query Conservation											.	.																																																									.	.	.	.
Alig confidence											.	.																				.	.	.													.																						.	.	.	.
Template Conservation																																.	.	.													.
Template Sequence		A	E	I	Y	E	H	L	N	K	Q	I	K	I	N	E	L	R	Y	L	S	S	G	D	D	S	D	T	F	L	C	.	.	.	N	E	Q	Y	V	V	K	V	P	K	R	D	.	S	V	R	I	S	Q	K	R	E	F	E	L	Y	R	F	L	E	N	C	K	L	S	Y	Q	I	P	A	V	V	Y	Q	S	D	R
Template Known Secondary structure												S			S									S	S							.	.	.	T	T	T							S	S	S	.																	T	T	S			S	S	B									S	S
Template Predicted Secondary structure																																.	.	.													.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.				.	.	.	.	40	.	.	.	.	.	.	.		.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.												100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.								.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.																						.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.																						.	.	.	.	.
Query Sequence		W	M	V	V	D	Y	L	P	G	A	V	K	T	Y	.	.	.	.	.	.	.	.	.	.	.	L	P	D	T	N	E	L	A	G	L	L	Y	Y	L	H	Q	Q	P	R	F	G	W	.	.	.	.	.	.	.	R	I	T	L	L	P	L	L	E	L	Y	W	Q	Q	S	D	P	A	R	R	T	.	.	.	.	.
Query Conservation																.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.																						.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.																						.	.	.	.	.
Template Conservation
Template Sequence		F	N	I	M	K	Y	I	K	G	E	R	I	T	Y	E	Q	Y	H	K	L	S	E	K	E	K	D	A	L	A	Y	D	E	A	T	F	L	K	E	L	H	S	I	E	I	D	C	S	V	S	L	F	S	D	A	L	V	N	K	K	D	K	F	L	Q	D	K	K	L	L	I	S	I	L	E	K	E	Q	L	L	T
Template Known Secondary structure											B								T	T	S																						S				T	T	S					T	T	B																					T	T
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
						143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.		.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210		.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.																																									.																													.
Query SS confidence		.	.	.	.																																									.																													.
Query Sequence		.	.	.	.	V	G	W	L	R	M	L	K	R	L	R	K	A	R	E	P	R	P	L	R	L	S	P	L	H	M	D	V	H	A	G	N	L	V	H	S	A	S	G	L	.	K	L	I	D	W	E	Y	A	G	D	G	D	I	A	L	E	L	A	A	V	W	V	E	N	T	E	Q	H	.	R	Q	L	V	N	D
Query Conservation		.	.	.	.																																									.																													.
Alig confidence		.	.	.	.																																									.																													.
Template Conservation
Template Sequence		D	E	M	L	E	H	I	E	T	I	Y	E	N	I	L	N	N	A	V	L	F	K	Y	T	P	C	L	V	H	N	D	F	S	A	N	N	M	I	F	R	N	N	R	L	F	G	V	I	D	F	G	D	F	N	V	G	D	P	D	N	D	F	L	C	L	L	D	C	S	T	D	D	F	G	K	E	F	G	R	K
Template Known Secondary structure																	T		G	G	G	G									S			S	G	G	G					T	T									T	T						G	G	G	G	T	T	T	T	T	S	S	S	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		217	.	.	220	.	.		.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		Y	A	T	R	A	K	.	I	Y	P	A	Q	L	W	R	Q	V	R	R	W	F	P	W	L	L	M	L	K	A	G	W	F	E	Y	R	W	R	Q	T	G	D	Q	Q	F	I	R	L	A	D	D	T	W	R	Q	L	L	I	K
Query Conservation								.
Alig confidence								.																										.	.	.	.
Template Conservation																																		.	.	.	.
Template Sequence		V	L	K	Y	Y	Q	H	K	A	P	E	V	A	E	R	K	A	E	L	N	D	V	Y	W	S	I	D	Q	I	I	Y	G	.	.	.	.	Y	E	R	K	D	R	E	M	L	I	K	G	V	S	E	L	L	Q	T	Q	A	E
Template Known Secondary structure					T	T	T		S															T										.	.	.	.			T	T													T	T	S		G	G
Template Predicted Secondary structure																																		.	.	.	.
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.					.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions