Job Description P75948 Confidence 100.00% Date Thu Jan 5 12:16:18 GMT 2012 Rank 5 Aligned Residues 267 % Identity 18% Template c3f2rA_ PDB info PDB header:transferase Chain: A: PDB Molecule:choline kinase alpha; PDBTitle: crystal structure of human choline kinase alpha in complex2 with hemicholinium-3 Resolution 2.35 Å

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		5	.	.	.	.	10	.	.				.	.	.	.	.	.	.	20									.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.			.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
Predicted Secondary structure										.	.	.									.	.	.	.	.	.	.	.																																			.	.
Query SS confidence										.	.	.									.	.	.	.	.	.	.	.																																			.	.
Query Sequence		S	N	N	P	I	T	R	D	.	.	.	E	L	L	S	R	F	F	P	.	.	.	.	.	.	.	.	Q	Y	H	P	V	T	T	F	N	S	G	L	S	G	G	S	F	L	I	E	H	Q	G	Q	R	F	V	V	R	Q	P	H	D	P	.	.	D	A	P	Q	S	A	F	L	R	Q	Y	R	A	L	S	Q	L
Query Conservation										.	.	.									.	.	.	.	.	.	.	.																																			.	.
Alig confidence										.	.	.									.	.	.	.	.	.	.	.																																			.	.
Template Conservation
Template Sequence		Q	P	E	P	R	T	R	R	R	A	Y	L	W	C	K	E	F	L	P	G	A	W	R	G	L	R	E	D	E	F	H	I	S	V	I	R	G	G	L	S	N	M	L	F	Q	C	S	L	P	D	T	T	A	T	L	G	D	E	P	R	K	V	L	L	R	L	Y	G	A	M	V	L	E	S	V	M	F	A	I	L
Template Known Secondary structure																			S		G	G	G	T	T			G	G	G									S	S	S										T	T				S	S	S			S
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
			72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.						.	.	.	.	.	.	.	110	.	.	.	.	.	.			.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure		.																																.	.	.	.	.															.	.																											.
Query SS confidence		.																																.	.	.	.	.															.	.																											.
Query Sequence		.	P	A	C	I	A	P	K	P	H	L	Y	L	R	D	W	M	V	V	D	Y	L	P	G	A	V	K	T	Y	L	P	D	.	.	.	.	.	T	N	E	L	A	G	L	L	Y	Y	L	H	Q	Q	.	.	P	R	F	G	W	R	I	T	L	L	P	L	L	E	L	Y	W	Q	Q	S	D	P	A	R	R	T	.
Query Conservation		.																																.	.	.	.	.															.	.																											.
Alig confidence		.																																.	.	.	.	.															.	.																											.
Template Conservation
Template Sequence		A	E	R	S	L	G	P	K	L	Y	G	I	F	P	Q	G	R	L	E	Q	F	I	P	S	R	R	L	D	T	E	E	L	S	L	P	D	I	S	A	E	I	A	E	K	M	A	T	F	H	G	M	K	M	P	F	N	K	E	P	K	W	L	F	G	T	M	E	K	Y	L	K	E	V	L	R	I	K	F	T	E
Template Known Secondary structure				T	T	S	S								T	T														G	G	G	G	G	S																T				S	S			S																	T					S
Template Predicted Secondary structure
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
														143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.								.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	V	G	W	L	R	M	L	K	R	L	R	K	A	R	E	P	R	P	L	R	L	S	P	L	H	M	D	V	H	A	G	N	L	V	H	.	.	.	.	.	.	.	S	A	S	G	L	K	L	I	D	W	E	Y	A	G	D	G	D	I	A	L	E	L	A	A	V	W
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	S	R	I	K	K	L	H	K	L	L	S	Y	N	L	P	L	E	L	E	N	L	R	S	L	L	E	S	T	P	S	P	V	V	F	C	H	N	D	C	Q	E	G	N	I	L	L	L	E	G	R	E	N	S	E	K	Q	K	L	M	L	I	D	F	E	Y	S	S	Y	N	Y	R	G	F	D	I	G	N	H	F
Template Known Secondary structure													T	T															T	S									S			S	G	G	G					T	T	G	G	G		S	S		S							T	T
Template Predicted Secondary structure
Template SS confidence
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
		204	.	.	.																						.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.												.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	E	N	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	Q	H	R	Q	L	V	N	D	Y	A	T	R	A	K	I	Y	P	.	.	.	.	.	.	.	.	.	.	.	A	Q	L	W	R	Q	V	R	R	W	F	P	W	L	L	M	L	K	A	G	W	F	E	Y	R	W
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		C	E	W	M	Y	D	Y	S	Y	E	K	Y	P	F	F	R	A	N	I	R	K	Y	P	T	K	K	Q	Q	L	H	F	I	S	S	Y	L	P	A	F	Q	D	F	E	N	L	S	T	E	E	K	S	I	I	K	E	E	M	L	L	E	V	N	R	F	A	L	A	S	H	F	L	W	G	L	W	S	I	V	Q	A
Template Known Secondary structure				T	T			T	T		S	S	T	T	S					G	G	G	S																				G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.
		252	.	.	.		.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		R	Q	T	G	.	D	Q	Q	F	I	R	L	A	D	D	T	W	R	Q	L	L
Query Conservation						.
Alig confidence						.
Template Conservation
Template Sequence		K	I	S	S	I	E	F	G	Y	M	D	Y	A	Q	A	R	F	D	A	Y	F
Template Known Secondary structure						S	S	S
Template Predicted Secondary structure
Template SS confidence
		429	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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