Job Description P75948 Confidence 96.22% Date Thu Jan 5 12:16:18 GMT 2012 Rank 85 Aligned Residues 140 % Identity 16% Template c2ivsA_ PDB info PDB header:transferase Chain: A: PDB Molecule:proto-oncogene tyrosine-protein kinase receptor PDBTitle: crystal structure of non-phosphorylated ret tyrosine kinase2 domain Resolution 2.00 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.								.	.	.	.	.	.	.	.	50			.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.					.	.	.	.	90	.
Predicted Secondary structure																			.	.	.	.	.	.	.										.	.																																				.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.										.	.																																				.	.	.	.
Query Sequence		V	T	T	F	N	S	G	L	S	G	G	S	F	L	I	E	H	.	.	.	.	.	.	.	Q	G	Q	R	F	V	V	R	Q	.	.	P	H	D	P	D	A	P	Q	S	A	F	L	R	Q	Y	R	A	L	S	Q	L	P	A	C	I	A	P	K	P	H	L	Y	L	R	D	.	.	.	.	W	M	V	V	D	Y
Query Conservation																			.	.	.	.	.	.	.										.	.																																				.	.	.	.
Alig confidence																			.	.	.	.	.	.	.										.	.																																				.	.	.	.
Template Conservation
Template Sequence		G	K	T	L	G	E	G	E	F	G	K	V	V	K	A	T	A	F	H	L	K	G	R	A	G	Y	T	T	V	A	V	K	M	L	K	E	N	A	S	P	S	E	L	R	D	L	L	S	E	F	N	V	L	K	Q	V	N	H	P	H	V	I	K	L	Y	G	A	C	S	Q	D	G	P	L	L	L	I	V	E	Y
Template Known Secondary structure									S	S	S									T	G	G	G		S	S											T	T																	T	T				T	T	B									S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		727	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	G	A	V	K	T	Y	L	P	D	T	N	E	L	A	G	L	L	Y	Y	L	H	Q	Q	P	R	F	G	W	R	I	T	L	L	P	L	L	E	L	Y	W	Q	Q	S	D	P	A	R	R	T	V	G	W	L	R	M	L	K	R	L	R	K	A	R	E	P	R	P	L	R	L	S	P	L	H	M	D	V	H
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.
Template Sequence		A	K	Y	G	S	L	R	.	.	.	.	.	.	.	.	.	G	F	L	R	E	S	R	K	V	G	P	G	Y	L	R	A	L	T	M	G	D	L	I	S	F	.	.	.	.	.	.	.	.	.	.	.	.	.	A	W	Q	I	S	Q	G	M	Q	Y	L	A	E	M	K	.	.	.	.	L	V	H	R	D	L	A
Template Known Secondary structure			T	T		B			.	.	.	.	.	.	.	.	.						T	T	T	S	T	T															.	.	.	.	.	.	.	.	.	.	.	.	.														T	T	.	.	.	.							S
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.
Template SS confidence
		807	.	.	810	.	.	.										.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.														.	840	.	.	.	.	.	.	.	.	.	850	.	.	.					.	.	.	.	.	.	860
		172	.	.	.	.	.	.	.	180	.		.	.	.	.	.	.	.	.	190
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		A	G	N	L	V	H	S	A	S	G	.	L	K	L	I	D	W	E	Y	A
Query Conservation												.
Alig confidence												.
Template Conservation
Template Sequence		A	R	N	I	L	V	A	E	G	R	K	M	K	I	S	D	F	G	L	S
Template Known Secondary structure		G	G	G					T	T	T								T	T
Template Predicted Secondary structure
Template SS confidence
		877	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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