Job Description P37095 Confidence 35.67% Date Thu Jan 5 11:54:47 GMT 2012 Rank 50 Aligned Residues 131 % Identity 11% Template c1vgyB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:succinyl-diaminopimelate desuccinylase; PDBTitle: crystal structure of succinyl diaminopimelate desuccinylase Resolution 1.90 Å

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		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																													.	.	.	.	.
Query SS confidence																																																																													.	.	.	.	.
Query Sequence		M	I	I	D	W	V	R	D	T	I	N	A	P	A	E	E	L	G	P	S	Q	L	A	Q	R	A	V	D	L	I	S	N	V	A	G	D	R	V	T	Y	R	I	T	K	G	E	D	L	R	E	Q	G	Y	M	G	L	H	T	V	G	R	G	S	E	R	S	P	V	L	L	A	L	D	Y	N	.	.	.	.	.
Query Conservation																																																																													.	.	.	.	.
Alig confidence																																			.	.	.									.	.	.	.	.	.																										.	.	.	.	.
Template Conservation																																			.	.	.									.	.	.	.	.	.
Template Sequence		Q	S	L	E	L	A	K	E	L	I	S	R	P	S	V	T	P	D	D	R	D	C	Q	K	L	X	A	E	R	L	H	K	I	.	.	.	G	F	A	A	E	E	X	H	.	.	.	.	.	.	F	G	N	T	K	N	I	W	L	R	R	G	T	K	A	P	V	V	C	F	A	G	H	T	D	V	V	P	T	G
Template Known Secondary structure												T	S			B	T	T			T	T											T	T	.	.	.	T								.	.	.	.	.	.	B	T	T	B									S	S	S	S										B
Template Predicted Secondary structure																																			.	.	.									.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.				.	.	40	.	.	.	.	.							.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.			.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure																																																											.	.
Query SS confidence																																																											.	.
Query Sequence		P	T	G	D	K	E	A	P	V	Y	A	C	L	V	G	K	G	I	T	F	D	S	G	G	Y	S	I	K	Q	T	A	F	M	D	S	M	K	S	D	M	G	G	A	A	T	V	T	G	A	L	A	F	A	I	T	R	G	.	.	L	N	K	R	V	K	L	F	L	C	C	A	D	N	L	I	S	G	N	A
Query Conservation																																																											.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	V	E	K	W	D	S	P	P	F	E	P	A	E	R	D	G	R	L	Y	G	R	G	A	.	.	.	.	.	.	.	.	.	.	.	.	A	D	X	K	T	S	I	A	C	F	V	T	A	C	E	R	F	V	A	K	H	P	N	H	Q	G	S	I	A	L	L	I	T	S	D	E	E	G	D	A	L	D	G
Template Known Secondary structure		S	G	G	G	S	S	S		T	T	S					T	T				S	T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T																			T	T		S	S								S		S	S	S			T	T	S
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.													100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions