Job Description P77395 Confidence 99.09% Date Thu Jan 5 12:28:31 GMT 2012 Rank 166 Aligned Residues 181 % Identity 18% Template c3mkrA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:coatomer subunit epsilon; PDBTitle: crystal structure of yeast alpha/epsilon-cop subcomplex of the copi2 vesicular coat Resolution 2.60 Å

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		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.			.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure																																														.	.																														.	.	.	.	.
Query SS confidence																																														.	.																														.	.	.	.	.
Query Sequence		E	A	I	R	A	L	L	D	K	V	L	P	R	E	E	E	L	K	A	Q	Q	A	M	Q	L	M	Q	E	S	N	Y	T	D	A	L	P	L	L	K	D	A	W	Q	L	.	.	S	N	Q	N	G	E	I	G	L	L	L	A	E	T	L	I	A	L	N	R	S	E	D	A	E	A	V	L	K	.	.	.	.	.
Query Conservation																																														.	.																														.	.	.	.	.
Alig confidence																																														.	.																														.	.	.	.	.
Template Conservation
Template Sequence		G	V	V	L	D	E	I	K	P	S	S	A	P	E	L	Q	A	V	R	M	F	A	E	Y	L	A	S	H	S	R	R	D	A	I	V	A	E	L	D	R	E	M	S	R	S	V	D	V	T	N	T	T	F	L	L	M	A	A	S	I	Y	F	Y	D	Q	N	P	D	A	A	L	R	T	L	H	Q	G	D	S	L
Template Known Secondary structure								S		T	T	S																	S	T	T														S					S															T	T										T	T			S
Template Predicted Secondary structure
Template SS confidence
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
																												173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	I	P	L	Q	D	Q	D	T	R	Y	Q	G	L	V	A	Q	I	E	L	L	K	Q	A	A	D	T	P	E	I	Q	Q	L	Q	Q	Q	V	A	E	N	P	E	D	A	A	L	A	T	Q	L	A	L	Q	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	C	M	A	M	T	V	Q	I	L	L	K	L	D	R	L	D	L	A	R	K	E	L	K	K	M	Q	D	Q	D	E	D	A	T	L	T	Q	L	A	T	A	W	V	S	L	A	A	G	G	E	K	L	Q	D	A	Y	Y	I	F	Q	E	M	A	D	K	C	S	P	T	L	L	L	L	N	G	Q	A	A	C	H
Template Known Secondary structure														T	T																	T	T																	T	T																S
Template Predicted Secondary structure
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	Q	V	G	R	N	E	E	A	L	E	L	L	F	G	H	L	R	K	D	L	T	A	A	D	G	Q	T	R	K	T	F	Q	E	I	L	A	A	L	G	T	G	D	A	L	A	S	K	Y	R	R	Q	L	Y	A	L
Query Conservation
Alig confidence																								.	.
Template Conservation																								.	.
Template Sequence		M	A	Q	G	R	W	E	A	A	E	G	V	L	Q	E	A	L	D	K	D	S	G	.	.	H	P	E	T	L	I	N	L	V	V	L	S	Q	H	L	G	K	P	P	E	V	T	N	R	Y	L	S	Q	L	K	D	A
Template Known Secondary structure				T	T																	T	T	.	.															T	T
Template Predicted Secondary structure																								.	.
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.			.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions