Job Description P77395 Confidence 98.69% Date Thu Jan 5 12:28:31 GMT 2012 Rank 220 Aligned Residues 169 % Identity 13% Template c2yhcA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:upf0169 lipoprotein yfio; PDBTitle: structure of bamd from e. coli Resolution 1.80 Å

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		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.				.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.
Query SS confidence																																					.	.	.
Query Sequence		E	E	E	L	K	A	Q	Q	A	M	Q	L	M	Q	E	S	N	Y	T	D	A	L	P	L	L	K	D	A	W	Q	L	S	N	Q	N	.	.	.	G	E	I	G	L	L	L	A	E	T	L	I	A	L	N	R	S	E	D	A	E	A	V	L	K	T	I	P	L	Q	D	Q	D	T	R	Y	Q	G	L	V	A	Q
Query Conservation																																					.	.	.
Alig confidence																																					.	.	.
Template Conservation
Template Sequence		P	P	N	E	I	Y	A	T	A	Q	Q	K	L	Q	D	G	N	W	R	Q	A	I	T	Q	L	E	A	L	D	N	R	Y	P	F	G	P	Y	S	Q	Q	V	Q	L	D	L	I	Y	A	Y	Y	K	N	A	D	L	P	L	A	Q	A	A	I	D	R	F	I	R	L	N	P	T	H	P	N	I	D	Y	V	M	Y
Template Known Secondary structure																	T																	T	T	S	T	T															T	T																	T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		190	.	.	.	.	.																									.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	E	L	L	K	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	D	T	P	E	I	Q	Q	L	Q	Q	Q	V	A	E	N	P	E	D	A	A	L	A	T	Q	L	A	L	Q	L	H	Q	V	G	R	N	E	E	A	L	E	L	L	F	G	H	L	R	K
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	R	G	L	T	N	M	A	L	D	D	D	P	Q	Q	A	R	A	A	F	S	D	F	S	K	L	V	R	G	Y	P	N	S	Q	Y	T	T	D	A	T	K	R	L	V	F	L	K	D	R	L	A	K	Y	E	Y	S	V	A	E	Y	Y	T	E	R	G	A	W	V	A	V	V	N	R	V	E	G	M	L	R	D
Template Known Secondary structure																													T	T		T	T		T	T																														T
Template Predicted Secondary structure
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		246	.	.	.	250		.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure							.
Query SS confidence							.
Query Sequence		D	L	T	A	A	.	D	G	Q	T	R	K	T	F	Q	E	I	L	A	A	L	G	T	G	D	A	L	A	S	K	Y	R	R	Q	L	Y	A
Query Conservation							.
Alig confidence							.
Template Conservation
Template Sequence		Y	P	D	T	Q	A	T	R	D	A	L	P	L	M	E	N	A	Y	R	Q	M	Q	M	N	A	Q	A	E	K	V	A	K	I	I	A	A	N
Template Known Secondary structure		S	T	T	S																	T	T
Template Predicted Secondary structure
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions