Job Description P77395 Confidence 98.24% Date Thu Jan 5 12:28:31 GMT 2012 Rank 251 Aligned Residues 165 % Identity 13% Template c1ltxA_ PDB info PDB header:transferase/protein binding Chain: A: PDB Molecule:rab geranylgeranyltransferase alpha subunit; PDBTitle: structure of rab escort protein-1 in complex with rab2 geranylgeranyl transferase and isoprenoid Resolution 2.70 Å

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		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130		.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.											.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure																		.																																		.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.																																		.	.	.	.	.	.	.	.	.	.
Query Sequence		E	L	K	A	Q	Q	A	M	Q	L	M	Q	E	S	N	Y	.	T	D	A	L	P	L	L	K	D	A	W	Q	L	S	N	Q	N	G	E	I	G	L	L	L	A	E	T	L	I	A	L	N	R	.	.	.	.	.	.	.	.	.	.	S	E	D	A	E	A	V	L	K	T	I	P	L	Q	D	Q	D	T	R	Y
Query Conservation																		.																																		.	.	.	.	.	.	.	.	.	.
Alig confidence																		.																																		.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	S	A	T	Q	A	V	F	Q	K	R	Q	A	G	E	L	D	E	S	V	L	E	L	T	S	Q	I	L	G	A	N	P	D	F	A	T	L	W	N	C	R	R	E	V	L	Q	H	L	E	T	E	K	S	P	E	E	S	A	A	L	V	K	A	E	L	G	F	L	E	S	C	L	R	V	N	P	K	S	Y	G
Template Known Secondary structure														S				S	S	T	T												T	T												G	G	G	S	S	S	S	S		T	T	T																				S
Template Predicted Secondary structure
Template SS confidence
		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.			.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.		.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.																																			.																		.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.																																			.																		.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	G	L	V	A	Q	I	E	L	L	K	Q	A	A	.	.	D	T	P	E	I	Q	Q	L	Q	Q	Q	V	A	E	N	P	E	D	A	A	L	A	T	Q	L	A	L	Q	L	H	Q	V	G	R	.	N	E	E	A	L	E	L	L	F	G	H	L	R	K	D	L	T	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																.	.																																			.																		.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.																																			.																		.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	W	H	H	R	C	W	L	L	S	R	L	P	E	P	N	W	A	R	E	L	E	L	C	A	R	F	L	E	A	D	E	R	N	F	H	C	W	D	Y	R	R	F	V	A	A	Q	A	A	V	A	P	A	E	E	L	A	F	T	D	S	L	I	T	R	N	F	S	N	Y	S	S	W	H	Y	R	S	C	L	L
Template Known Secondary structure														S	S		T																T	T															T	T																		S	S												T
Template Predicted Secondary structure
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
										249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.			.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.																		.	.
Query SS confidence		.	.	.	.	.	.	.	.																		.	.
Query Sequence		.	.	.	.	.	.	.	.	A	A	D	G	Q	T	R	K	T	F	Q	E	I	L	A	A	L	.	.	G	T	G	D	A	L	A	S	K	Y	R	R	Q	L
Query Conservation		.	.	.	.	.	.	.	.																		.	.
Alig confidence		.	.	.	.	.	.	.	.																		.	.
Template Conservation
Template Sequence		P	Q	L	H	P	Q	G	R	L	P	E	N	V	L	L	K	E	L	E	L	V	Q	N	A	F	F	T	D	P	N	D	Q	S	A	W	F	Y	H	R	W	L
Template Known Secondary structure		T	T	T					S	S														T						T	T											T
Template Predicted Secondary structure
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions