 |
| Job Description | P0A700 | | Confidence | 72.44% | Date | Thu Jan 5 11:04:19 GMT 2012 |
| Rank | 57 | Aligned Residues | 40 |
| % Identity | 30% | Template | c1i3qI_ |
| PDB info |
PDB header:transcription | Chain: I: PDB Molecule:dna-directed rna polymerase ii 14.2kd |
PDBTitle: rna polymerase ii crystal form i at 3.1 a resolution
|
| Resolution | 3.10 Å |
|
| | |
59 | 60 | . | . | . | . | . | . | . | . | . | |
|
|
|
70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | 90 | . | . | . | . | . | . | . | . |
| Predicted Secondary structure | |
|
|  | | | | |  |
|
| | . | . | . | . | | | | |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
| |
| Query SS confidence | |
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence | |
G | C | K | L | H | L | E | E | Q | E | A | . |
. |
. |
. |
E | C | W | C | E | T | C | Q | Q | Y | V | T | L | L | T | Q | R | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
V | R | R | C | P | Q | C | H | G | D | M | L |
| Query Conservation | |
|
| |
| |
| | | |
| | . | . | . | . | | | |
| | |
|
| | | | | | | | | | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | | | |
|
| |
|
|
| | | |
| Alig confidence | |
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation | |
|
|
|
| | | | | | | | | | | | | | |
| | |
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
|
|
|
|
| | | |
|
| Template Sequence | |
N | N | M | L | Y | P | R | E | D | K | E | N | N | R | L | L | F | E | C | R | T | C | S | Y | V | E | E | A | G | S | P | L | V | Y | R | H | E | L | I | T | N | I | G | E | T | A | G | V | V | Q | D | I | G | S | D | P | T | L | P | R | S | D | R | E | C | P | K | C | H | S | R | E | N |
| Template Known Secondary structure | |
|
| B | | | | | | | T | T | T | T | | | | | | | S | S | S |
|
| | | |
| S |
| S |
|
|
|
|
|
| S | S |
|
| T | T | S | S |
| S |
|
| T | T | G | G | G |
| T | T | S |
|
|
|
|
|
|
| T | T | T |
|
| S |
| B |
| Template Predicted Secondary structure | |
|
| | | |
|
|
|
|
|
|
|
| | | | | | |
|
|
|
|
|
|
|
|
|
|
|
| | | | | | | | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| | |
| Template SS confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| | |
11 | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . |
| |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
| |
|
|
|
